DEBUG: Investigate failing tests in datalad-extensions

[bpoldrack]

Addressing #158.

[codecov-io]

Codecov Report

Merging #159 into master will increase coverage by 0.02%. The diff coverage is 100.00%.

@@            Coverage Diff             @@
##           master     #159      +/-   ##
==========================================
+ Coverage   86.17%   86.20%   +0.02%     
==========================================
  Files          17       17              
  Lines         955      957       +2     
==========================================
+ Hits          823      825       +2     
  Misses        132      132              

Impacted Files	Coverage Δ
datalad_hirni/commands/spec2bids.py	85.43% <100.00%> (+0.28%)	:arrow_up:

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[bpoldrack]

So this is strange. Just dropping some snippets here to not forget about them while digging

[INFO] ...>aggregate:370,757>log:297  Finished metadata aggregation into Dataset(/tmp/datalad_temp__single_session_dicom2bids5fgc8gsb) 
[INFO] ...>test_dicomconv:56>dataset:498>utils:494,482,413,552>spec2bids:268>utils:413,552>run_procedure:442  Running procedure hirni-dicom-converter 
[INFO] ...>run_procedure:452>utils:413,552>run:239,628,460  == Command start (output follows) ===== 
[INFO] hirni-dicom-converter:114>dataset:498>utils:494,482,413,552>containers_run:138>run:588,343  Making sure inputs are available (this may take some time) 
[WARNING] ...>run:588,349>utils:494,482,413,552>get:780,542>gitrepo:328>annexrepo:1352,2358  Running get resulted in stderr output: download failed: Unauthorized
download failed: Unauthorized
download failed: Unauthorized
git-annex: get: 1 failed

[ERROR] ...>utils:494,482,413,588  Remote psydata-store not usable by git-annex; setting annex-ignore [get(/tmp/datalad_temp__single_session_dicom2bids5fgc8gsb/code/hirni-toolbox/converters/heudiconv/heudiconv.simg)] 
[INFO] ...>run:628,460  == Command start (output follows) ===== 
ERROR  : Image path code/hirni-toolbox/converters/heudiconv/heudiconv.simg doesn't exist: No such file or directory
ABORT  : Retval = 255
[INFO] ...>run:628,488  == Command exit (modification check follows) ===== 
[INFO] ...>run:699  The command had a non-zero exit code. If this is expected, you can save the changes with 'datalad save -d . -r -F .git/COMMIT_EDITMSG' 

• The added log messages in spec2bids don't appear at all. How so?
• psydata storage remote for hirni-toolbox not accessible. How can that only apply to Github Action while it's not a problem via Travis?

[bpoldrack]

Another note: Within the same test run as above, another conversion succeeds, which needs to get the very same container from the very same source. No "download failed: Unauthorized" there.

[codecov-commenter]

Codecov Report

Merging #159 into master will decrease coverage by 0.50%. The diff coverage is 56.25%.

@@            Coverage Diff             @@
##           master     #159      +/-   ##
==========================================
- Coverage   86.17%   85.67%   -0.51%     
==========================================
  Files          17       18       +1     
  Lines         955      970      +15     
==========================================
+ Hits          823      831       +8     
- Misses        132      139       +7     

Impacted Files	Coverage Δ
datalad_hirni/tests/utils.py	41.66% <41.66%> (ø)
datalad_hirni/commands/spec2bids.py	85.43% <100.00%> (+0.28%)	:arrow_up:
datalad_hirni/tests/test_demos.py	92.95% <100.00%> (+0.10%)	:arrow_up:

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