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psychoinformatics-de / datalad-hirni

DataLad extension for (semi-)automated, reproducible processing of (medical/neuro)imaging data
http://datalad.org
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Automatic creation of task-rest_events.tsv #166

Closed lsempf closed 3 years ago

lsempf commented 3 years ago

Hi, I ran into a problem during the bids conversion:

Hirni (presumably heudiconv) generates these task-rest_events.tsv files for resting state automatically as a default when converting DICOM to niftis. In our opinion hirni should delete these template files as they lead to bids warnings when checking the bids compatibility of the data:

Type: Warning File: sub-014_ses-004_task-rest_events.tsv Location: bids/sub-014/ses-004/func/sub-014_ses-004_task-rest_events.tsv Reason: Tabular file contains custom columns not described in a data dictionary Evidence: Columns: TODO -- fill in rows and add more tab-separated columns if desired not defined, please define in: /events.json, /task-rest_events.json,/sub-014/sub-014_events.json,/sub-014/sub-014_task-rest_events.json,/sub-014/ses-004/sub-014_ses-004_events.json,/sub-014/ses-004/sub-014_ses-004_task-rest_events.json,/sub-014/ses-004/func/sub-014_ses-004_events.json,/sub-014/ses-004/func/sub-014_ses-004_task-rest_events.json

bpoldrack commented 3 years ago

Thanks, @lsempf! I agree.

Technically, this needs to be addressed in https://github.com/psychoinformatics-de/hirni-toolbox. Therefore linked related issue above and will close here.