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psychoinformatics-de / datalad-hirni

DataLad extension for (semi-)automated, reproducible processing of (medical/neuro)imaging data
http://datalad.org
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Notes on BIDS conversion #39

Closed mih closed 6 years ago

mih commented 6 years ago 
# fresh dataset
datalad create bids
cd bids
# add container with converter
datalad containers-add conversion -u shub://mih/ohbm2018-training:heudiconv --call-fmt 'singularity exec --bind {{pwd}} {img} {cmd}'
# grab raw DICOM dataset with all subjects and acquisition sessions
datalad install -d . -s ../raw sourcedata --reckless
# convert a single acquisition to BIDS
datalad hirni-spec2bids -a sourcedata/REDACTED --anonymize
mih commented 6 years ago

No change since, and now produces a dataset that passed the BIDS validator.