psychoinformatics-de / hirni-toolbox

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faulty output specification in heudiconv procedure #18

Open bpoldrack opened 3 years ago

bpoldrack commented 3 years ago

heudiconv procedure tries to specify outputs for containers-run, anticipating what may be created or would be there already if user reruns spec2bids (or the procedure directly). Part of that is a task-modality.json file. However, bids-modality isn't accessible via substitutions for that call. It is only part of the spec for a particular series, but we call heudiconv via the dicomseries:all snippet. However, it should be possible to specify globs for that purpose.