Latest start-to-finish version including one round of polishing

ptrebert / project-diploid-assembly

Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data

MIT License

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Closed ptrebert closed 4 years ago

ptrebert commented 4 years ago

Testing-ready version for fully haplotype resolved assembly including one round of polishing
Processes both CCS and CLR
Can be deployed on a cluster infrastructure
In particular polishing steps are not yet tested
Does not include "joint" run mode for strand-seq based approach