Fix issues in alignments/assemblies

ptrebert / project-diploid-assembly

Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data

MIT License

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Fix issues in alignments/assemblies #3

Closed ptrebert closed 4 years ago

ptrebert commented 4 years ago

Fix several issues in alignment and assembly module that are only detected by Snakemake later in a pipeline run (after enough input is available to infer downstream file names)