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ptrebert / project-diploid-assembly

Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
MIT License
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kmer analysis #5

Closed ptrebert closed 3 years ago

ptrebert commented 4 years ago

add to pipeline

hg38 - phased assembly - Illumina reads

tobiasmarschall commented 4 years ago

Since working with reads directly when you last tried it, we could just use the proven recipe of lighter then bcalm and feed this into Bifrost as an assembly.

ptrebert commented 3 years ago

example code/rules for kmer analysis part of master now in dev/eval module run_kmer_analysis.smk