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ptrus / suffix-trees

Python implementation of Suffix Trees and Generalized Suffix Trees.
MIT License
121 stars 28 forks source link

Efficiency problem #15

Open bukosabino opened 5 years ago

bukosabino commented 5 years ago

Hi @ptrus ,

Very good python package. Congratulations!

I have the next problem:

I need to use Generalized Suffix Trees (k-lcs problem) with 2000 inputs and very big strings. I can work without problem with 5 or 10 rows, but with 2000 is impossible. What do you recommend me?

Regards,

yoshihikoueno commented 5 years ago

If it's that big, isn't it better to use C/C++?

Zhylkaaa commented 4 years ago

Can you try using #19 pull request, maybe this will help. Tell if it's worked for you