katievigil
commented
1 year ago Hi, I am having the same issue with trying to download the database. What was the solution? (/lustre/project/taw/share/conda-envs/build-dbs-env) [kvigil@cypress01-119 virmine]$ python virmine_make_dbs.py Getting viral data from NCBI Traceback (most recent call last): File "/lustre/project/taw/share/conda-envs/build-dbs-env/lib/python3.10/site-packages/ftputil/file.py", line 94, in _open self._conn = self._session.transfercmd(command, rest) File "/lustre/project/taw/share/conda-envs/build-dbs-env/lib/python3.10/ftplib.py", line 393, in transfercmd return self.ntransfercmd(cmd, rest)[0] File "/lustre/project/taw/share/conda-envs/build-dbs-env/lib/python3.10/ftplib.py", line 359, in ntransfercmd resp = self.sendcmd(cmd) File "/lustre/project/taw/share/conda-envs/build-dbs-env/lib/python3.10/ftplib.py", line 281, in sendcmd return self.getresp() File "/lustre/project/taw/share/conda-envs/build-dbs-env/lib/python3.10/ftplib.py", line 254, in getresp raise error_perm(resp) ftplib.error_perm: 550 all.faa.tar.gz: No such file or directory
The downloaded virus database all.faa.tar.gz cannot be opened,the decompressed file all_viral_faa.fasta is empty.Is there any other way to download it,or if you can just send me the data set?