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pwollstadt / IDTxl

The Information Dynamics Toolkit xl (IDTxl) is a comprehensive software package for efficient inference of networks and their node dynamics from multivariate time series data using information theory.
http://pwollstadt.github.io/IDTxl/
GNU General Public License v3.0
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Error end of the demo code. #60

Closed sonurdogan closed 3 years ago

sonurdogan commented 3 years ago

I got this error while I'm trying to run demos/demo_bivariate_te.py I used version of JPype1 (0.6.3) ....

sequential maximum statistic, n_perm: 500, testing 4 selected sources final source samples: [(1, 1), (1, 2), (1, 4), (3, 1)] final target samples: [(4, 1), (4, 4), (4, 2), (4, 3), (4, 5)]

0 -> 2, max_te_lag: 3
1 -> 3, max_te_lag: 2
1 -> 4, max_te_lag: 1
2 -> 0, max_te_lag: 3
3 -> 1, max_te_lag: 3
3 -> 4, max_te_lag: 1
4 -> 1, max_te_lag: 2
4 -> 3, max_te_lag: 5

Traceback (most recent call last): File "demos/demo_bivariate_te.py", line 22, in plot_network(results=results, weights='max_te_lag', fdr=False) File "/Users/onurdogan/Documents/IDTxl/idtxl/visualise_graph.py", line 67, in plot_network _plot_graph(graph, ax1, weights) File "/Users/onurdogan/Documents/IDTxl/idtxl/visualise_graph.py", line 153, in _plot_graph nx.draw_circular(graph, with_labels=True, node_size=600, alpha=1.0, File "/Users/onurdogan/opt/anaconda3/envs/idtxl/lib/python3.8/site-packages/networkx/drawing/nx_pylab.py", line 1097, in draw_circular draw(G, circular_layout(G), kwargs) File "/Users/onurdogan/opt/anaconda3/envs/idtxl/lib/python3.8/site-packages/networkx/drawing/nx_pylab.py", line 123, in draw draw_networkx(G, pos=pos, ax=ax, kwds) File "/Users/onurdogan/opt/anaconda3/envs/idtxl/lib/python3.8/site-packages/networkx/drawing/nx_pylab.py", line 326, in draw_networkx raise ValueError(f"Received invalid argument(s): {invalid_args}") ValueError: Received invalid argument(s): hold

pwollstadt commented 3 years ago

Just as a comment for other people stumbling over this: The hold argument was deprecated in newer versions of networkx. Please try updating the package if you experience similar issues.