Feature/add inference mlflow

[pwoznicki]

Major changes:

• fixed training with autologging of training parameters, preprocessor and classifier in MLFlow
• webapp: added Predict subpage for inference on a single case, giving out class probability and Shap explanation
• webapp: moved all steps into subpages
• webapp: added Getting started in the landing page

Fixes:

• webapp: fixed extraction params discarding Feature Names selected from Feature Classes

[codecov[bot]]

Codecov Report

Base: 59.14% // Head: 50.77% // Decreases project coverage by -8.37% :warning:

Coverage data is based on head (1a8ee7d) compared to base (bf7d6fd). Patch coverage: 44.28% of modified lines in pull request are covered.

Additional details and impacted files

```diff @@ Coverage Diff @@ ## main #22 +/- ## ========================================== - Coverage 59.14% 50.77% -8.38% ========================================== Files 29 43 +14 Lines 1383 2271 +888 ========================================== + Hits 818 1153 +335 - Misses 565 1118 +553 ``` | [Impacted Files](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki) | Coverage Δ | | |---|---|---| | [autorad/external/download\_WORC.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-YXV0b3JhZC9leHRlcm5hbC9kb3dubG9hZF9XT1JDLnB5) | `12.94% <ø> (ø)` | | | [autorad/training/optuna\_params.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-YXV0b3JhZC90cmFpbmluZy9vcHR1bmFfcGFyYW1zLnB5) | `18.60% <ø> (ø)` | | | [autorad/utils/conversion.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-YXV0b3JhZC91dGlscy9jb252ZXJzaW9uLnB5) | `38.63% <0.00%> (ø)` | | | [autorad/utils/utils.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-YXV0b3JhZC91dGlscy91dGlscy5weQ==) | `79.16% <ø> (+1.38%)` | :arrow_up: | | [autorad/utils/io.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-YXV0b3JhZC91dGlscy9pby5weQ==) | `38.09% <10.00%> (-3.37%)` | :arrow_down: | | [autorad/training/trainer.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-YXV0b3JhZC90cmFpbmluZy90cmFpbmVyLnB5) | `31.00% <19.56%> (ø)` | | | [autorad/models/classifier.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-YXV0b3JhZC9tb2RlbHMvY2xhc3NpZmllci5weQ==) | `35.65% <28.57%> (ø)` | | | [autorad/training/infer.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-YXV0b3JhZC90cmFpbmluZy9pbmZlci5weQ==) | `27.11% <30.00%> (ø)` | | | [tests/integration/test\_integration.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-dGVzdHMvaW50ZWdyYXRpb24vdGVzdF9pbnRlZ3JhdGlvbi5weQ==) | `32.00% <32.00%> (ø)` | | | [autorad/preprocessing/preprocessor.py](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki#diff-YXV0b3JhZC9wcmVwcm9jZXNzaW5nL3ByZXByb2Nlc3Nvci5weQ==) | `53.42% <36.36%> (ø)` | | | ... and [19 more](https://codecov.io/gh/pwoznicki/AutoRadiomics/pull/22/diff?src=pr&el=tree-more&utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki) | | Help us with your feedback. Take ten seconds to tell us [how you rate us](https://about.codecov.io/nps?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki). Have a feature suggestion? [Share it here.](https://app.codecov.io/gh/feedback/?utm_medium=referral&utm_source=github&utm_content=comment&utm_campaign=pr+comments&utm_term=Piotr+Wo%C5%BAnicki)

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