pyMBE provides tools to facilitate building up molecules with complex architectures in the Molecular Dynamics software ESPResSo. For an up-to-date API documention please check our website:
Current implementation for side chain vector generates the same perpendicular vector to the backbone vector for each side chain for a given peptide sequence. This is not desired when dealing with big side chain beads in the two model, as one risks overlapping of neighbouring side chains.
Current implementation for side chain vector generates the same perpendicular vector to the backbone vector for each side chain for a given peptide sequence. This is not desired when dealing with big side chain beads in the two model, as one risks overlapping of neighbouring side chains.