Cross reference INDRA Protein Modification

pybel / pybel

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

http://pybel.readthedocs.io

MIT License

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Cross reference INDRA Protein Modification #221

Closed cthoyt closed 7 years ago

cthoyt commented 7 years ago

make sure pybel supports everything in this list http://indra.readthedocs.io/en/latest/modules/statements.html

Extra credit: cross reference with SBO

cthoyt commented 7 years ago

Question for @johnbachman and @bgyori:

The BEL 2.0 specification has synonyms ADP-ribosylation, ADPRib, andadenosine diphosphoribosyl. Do these directly correspond to INDRA's ribosylation statement?

More specifically - is ADP ribosylation too specific? If that's the case, I can add a more general ribosylation term.

Otherwise, this issue is set and I'm ready to push the new version of PyBEL to PyPI with all the updates for INDRA.

bgyori commented 7 years ago

Yes, I think they are the same thing

cthoyt commented 7 years ago

Brilliant