Complete origin on protein and rna variants

pybel / pybel

🌶️ An ecosystem in Python for working with the Biological Expression Language (BEL)

http://pybel.readthedocs.io

MIT License

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Complete origin on protein and rna variants #31

Closed cthoyt closed 7 years ago

cthoyt commented 8 years ago

Not for post translational modifications though

cthoyt commented 7 years ago

I think this is actually a bad idea, because it can't be uniquely projected backwards which genomic mutations caused which protein mutations. Maybe forward projections could be done on genes, in the future. Changing this to future for now

cthoyt commented 7 years ago

Made this optional, but false by default. the --complete-origin option now works for pybel convert bash script, and all of the top-level functions now accept complete_origin=True in the **kwargs