Installation error - Githubissues

sammarfy commented 4 years ago

Ubuntu 18.04 Python 3.6.9 GCC 8.4.0 pytorch 1.6.0 cuda 10.0 llvmlite 0.31 is already installed in the system.

During handling of the above exception, another exception occurred:

Traceback (most recent call last): File "/tmp/pip-build-9zv3ptxx/llvmlite/ffi/build.py", line 191, in main() File "/tmp/pip-build-9zv3ptxx/llvmlite/ffi/build.py", line 181, in main main_posix('linux', '.so') File "/tmp/pip-build-9zv3ptxx/llvmlite/ffi/build.py", line 108, in main_posix "to the path for llvm-config" % (llvm_config,)) RuntimeError: llvm-config failed executing, please point LLVM_CONFIG to the path for llvm-config error: command '/usr/bin/python3' failed with exit status 1

Failed building wheel for llvmlite Running setup.py clean for llvmlite Failed to build llvmlite Installing collected packages: certifi, idna, chardet, urllib3, requests, googledrivedownloader, pyparsing, six, isodate, rdflib, decorator, networkx, numpy, pytz, python-dateutil, pandas, tqdm, threadpoolctl, scipy, joblib, scikit-learn, h5py, kiwisolver, cycler, pillow, matplotlib, ase, MarkupSafe, jinja2, llvmlite, setuptools, numba, future, torch, torch-geometric Running setup.py install for llvmlite ... error Complete output from command /usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-9zv3ptxx/llvmlite/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-txeptqdu-record/install-record.txt --single-version-externally-managed --compile --user --prefix=: running install running build got version from file /tmp/pip-build-9zv3ptxx/llvmlite/llvmlite/_version.py {'version': '0.34.0', 'full': 'c5889c9e98c6b19d5d85ebdd982d64a03931f8e2'} running build_ext /usr/bin/python3 /tmp/pip-build-9zv3ptxx/llvmlite/ffi/build.py LLVM version... Traceback (most recent call last): File "/tmp/pip-build-9zv3ptxx/llvmlite/ffi/build.py", line 105, in main_posix out = subprocess.check_output([llvm_config, '--version']) File "/usr/lib/python3.6/subprocess.py", line 356, in check_output *kwargs).stdout File "/usr/lib/python3.6/subprocess.py", line 423, in run with Popen(popenargs, **kwargs) as process: File "/usr/lib/python3.6/subprocess.py", line 729, in init restore_signals, start_new_session) File "/usr/lib/python3.6/subprocess.py", line 1364, in _execute_child raise child_exception_type(errno_num, err_msg, err_filename) FileNotFoundError: [Errno 2] No such file or directory: 'llvm-config': 'llvm-config'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/tmp/pip-build-9zv3ptxx/llvmlite/ffi/build.py", line 191, in <module>
    main()
  File "/tmp/pip-build-9zv3ptxx/llvmlite/ffi/build.py", line 181, in main
    main_posix('linux', '.so')
  File "/tmp/pip-build-9zv3ptxx/llvmlite/ffi/build.py", line 108, in main_posix
    "to the path for llvm-config" % (llvm_config,))
RuntimeError: llvm-config failed executing, please point LLVM_CONFIG to the path for llvm-config
error: command '/usr/bin/python3' failed with exit status 1

----------------------------------------

Command "/usr/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/pip-build-9zv3ptxx/llvmlite/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-txeptqdu-record/install-record.txt --single-version-externally-managed --compile --user --prefix=" failed with error code 1 in /tmp/pip-build-9zv3ptxx/llvmlite/

rusty1s commented 4 years ago

Seems to be caused by the recent numba version. It may help to install an earlier release, e.g. numba==0.50.1.

lianxh commented 3 years ago

Update the pip version to 20.3.3, it works for me.

The reason it comes from numba

paulagd commented 3 years ago

Hi, I am getting the same errors when trying to get lastest version of torch_geometric. I followed your comments and now I am getting the following. I hope you can help!

Thanks

`Traceback (most recent call last): File "/tmp/pip-build-pwlo09e3/llvmlite/ffi/build.py", line 191, in main() File "/tmp/pip-build-pwlo09e3/llvmlite/ffi/build.py", line 181, in main main_posix('linux', '.so') File "/tmp/pip-build-pwlo09e3/llvmlite/ffi/build.py", line 143, in main_posix raise RuntimeError(msg) RuntimeError: Building llvmlite requires LLVM 10.0.x or 9.0.x, got '6.0.0'. Be sure to set LLVM_CONFIG $ o the right executable path. Read the documentation at http://llvmlite.pydata.org/ for more information about building llvmlite.

error: command '/home/pgd721/work/my_env_research/bin/python3' failed with exit status 1

Failed building wheel for llvmlite running build [0/1874] got version from file /tmp/pip-build-pwlo09e3/llvmlite/llvmlite/_version.py {'version': '0.35.0', 'ful l': 'ea23b026930cc00824c907172383f54c9d438e6b'} running build_ext /home/pgd721/work/my_env_research/bin/python3 /tmp/pip-build-pwlo09e3/llvmlite/ffi/build.py LLVM version... 6.0.0

Traceback (most recent call last):
  File "/tmp/pip-build-pwlo09e3/llvmlite/ffi/build.py", line 191, in <module>
    main()
  File "/tmp/pip-build-pwlo09e3/llvmlite/ffi/build.py", line 181, in main
    main_posix('linux', '.so')
  File "/tmp/pip-build-pwlo09e3/llvmlite/ffi/build.py", line 143, in main_posix
    raise RuntimeError(msg)
RuntimeError: Building llvmlite requires LLVM 10.0.x or 9.0.x, got '6.0.0'. Be sure to set LLVM_CONFIG

to the right executable path. Read the documentation at http://llvmlite.pydata.org/ for more information about building llvmlite.

error: command '/home/pgd721/work/my_env_research/bin/python3' failed with exit status 1

----------------------------------------

Rolling back uninstall of llvmlite Found existing installation: rdflib 4.2.2 Uninstalling rdflib-4.2.2: Successfully uninstalled rdflib-4.2.2 Found existing installation: pytz 2019.1 Uninstalling pytz-2019.1: Successfully uninstalled pytz-2019.1 Found existing installation: python-dateutil 2.8.0 Uninstalling python-dateutil-2.8.0: Successfully uninstalled python-dateutil-2.8.0 Found existing installation: pandas 0.24.2 Uninstalling pandas-0.24.2: Successfully uninstalled pandas-0.24.2 Found existing installation: Jinja2 2.10.1 Uninstalling Jinja2-2.10.1: Successfully uninstalled Jinja2-2.10.1 Found existing installation: llvmlite 0.33.0 Uninstalling llvmlite-0.33.0: Successfully uninstalled llvmlite-0.33.0 Running setup.py install for llvmlite ... error Complete output from command /home/pgd721/work/my_env_research/bin/python3 -u -c "import setuptools, t okenize;file='/tmp/pip-build-pwlo09e3/llvmlite/setup.py';f=getattr(tokenize, 'open', open)(file);c ode=f.read().replace('\r\n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/ pip-0cvcrg6m-record/install-record.txt --single-version-externally-managed --compile --install-headers /ho me/pgd721/work/my_env_research/include/site/python3.6/llvmlite: Command "/home/pgd721/work/my_env_research/bin/python3 -u -c "import setuptools, tokenize;file='/tmp/p ip-build-pwlo09e3/llvmlite/setup.py';f=getattr(tokenize, 'open', open)(file);code=f.read().replace('\r \n', '\n');f.close();exec(compile(code, file, 'exec'))" install --record /tmp/pip-0cvcrg6m-record/inst all-record.txt --single-version-externally-managed --compile --install-headers /home/pgd721/work/my_env_re search/include/site/python3.6/llvmlite" failed with error code 1 in /tmp/pip-build-pwlo09e3/llvmlite/`

pyg-team / pytorch_geometric

Installation error #1695