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pyg-team / pytorch_geometric

Graph Neural Network Library for PyTorch
https://pyg.org
MIT License
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The problem of extension warning #9682

Open cloudpetticoats opened 1 month ago

cloudpetticoats commented 1 month ago

🐛 Describe the bug

I had installed python=3.10 torch=2.3 and torch-geometric=2.6.1 in anaconda for my mac, and had installed other extensions using pip install pyg_lib torch_scatter torch_sparse torch_cluster torch_spline_conv -f https://data.pyg.org/whl/torch-2.3.0+cpu.html. But when i run my program to test, the following warning will be appeared. 

/opt/anaconda3/envs/gnn_env/lib/python3.10/site-packages/torch_geometric/typing.py:68: UserWarning: An issue occurred while importing 'pyg-lib'. Disabling its usage. Stacktrace: dlopen(/opt/anaconda3/envs/gnn_env/lib/python3.10/site-packages/libpyg.so, 0x0006): Library not loaded: /Library/Frameworks/Python.framework/Versions/3.10/Python
  Referenced from: <D39B31F4-BCFB-3005-A82F-3F010BF36435> /opt/anaconda3/envs/gnn_env/lib/python3.10/site-packages/libpyg.so
  Reason: tried: '/Library/Frameworks/Python.framework/Versions/3.10/Python' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/Python.framework/Versions/3.10/Python' (no such file), '/Library/Frameworks/Python.framework/Versions/3.10/Python' (no such file)
  warnings.warn(f"An issue occurred while importing 'pyg-lib'. "
/opt/anaconda3/envs/gnn_env/lib/python3.10/site-packages/torch_geometric/typing.py:124: UserWarning: An issue occurred while importing 'torch-sparse'. Disabling its usage. Stacktrace: dlopen(/opt/anaconda3/envs/gnn_env/lib/python3.10/site-packages/libpyg.so, 0x0006): Library not loaded: /Library/Frameworks/Python.framework/Versions/3.10/Python
  Referenced from: <D39B31F4-BCFB-3005-A82F-3F010BF36435> /opt/anaconda3/envs/gnn_env/lib/python3.10/site-packages/libpyg.so
  Reason: tried: '/Library/Frameworks/Python.framework/Versions/3.10/Python' (no such file), '/System/Volumes/Preboot/Cryptexes/OS/Library/Frameworks/Python.framework/Versions/3.10/Python' (no such file), '/Library/Frameworks/Python.framework/Versions/3.10/Python' (no such file)
  warnings.warn(f"An issue occurred while importing 'torch-sparse'. "

Could anyone help with this? Thank you very much. The following picture is my anaconda environment.

Screenshot 2024-09-29 at 20 17 03

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zsh: command not found: #
Collecting environment information...
PyTorch version: 2.3.0
Is debug build: False
CUDA used to build PyTorch: None
ROCM used to build PyTorch: N/A

OS: macOS 14.6.1 (arm64)
GCC version: Could not collect
Clang version: 16.0.0 (clang-1600.0.26.3)
CMake version: Could not collect
Libc version: N/A

Python version: 3.10.14 (main, May  6 2024, 14:42:37) [Clang 14.0.6 ] (64-bit runtime)
Python platform: macOS-14.6.1-arm64-arm-64bit
Is CUDA available: False
CUDA runtime version: No CUDA
CUDA_MODULE_LOADING set to: N/A
GPU models and configuration: No CUDA
Nvidia driver version: No CUDA
cuDNN version: No CUDA
HIP runtime version: N/A
MIOpen runtime version: N/A
Is XNNPACK available: True

CPU:
Apple M3

Versions of relevant libraries:
[pip3] numpy==2.1.1
[pip3] torch==2.3.0
[pip3] torch_cluster==1.6.3
[pip3] torch-geometric==2.6.1
[pip3] torch_scatter==2.1.2
[pip3] torch_sparse==0.6.18
[pip3] torch_spline_conv==1.2.2
[conda] numpy                     2.1.1                    pypi_0    pypi
[conda] torch                     2.3.0                    pypi_0    pypi
[conda] torch-cluster             1.6.3                    pypi_0    pypi
[conda] torch-geometric           2.6.1                    pypi_0    pypi
[conda] torch-scatter             2.1.2                    pypi_0    pypi
[conda] torch-sparse              0.6.18                   pypi_0    pypi
[conda] torch-spline-conv         1.2.2                    pypi_0    pypi
akihironitta commented 1 month ago

I'm not very familiar with the env, but I believe it's been a known issue as reported in https://github.com/pyg-team/pyg-lib/issues?q=sort%3Aupdated-desc+is%3Aissue+macOS. Have you had a chance to look through some of the GitHub issues by chance?