Bump pyiron-atomistics from 0.2.63 to 0.6.1

[dependabot[bot]]

Bumps pyiron-atomistics from 0.2.63 to 0.6.1.

Release notes

Sourced from pyiron-atomistics's releases.

pyiron_atomistics-0.6.1

What's Changed

• Update Mendeleev to 0.17.0 by @​jan-janssen in pyiron/pyiron_atomistics#1442
• Remove setting calculation mode in ElasticMatrixJob by @​samwaseda in pyiron/pyiron_atomistics#1443
• [patch] remove initial magnetic moments by @​samwaseda in pyiron/pyiron_atomistics#1444
• Refactor Vasp output classes by @​pmrv in pyiron/pyiron_atomistics#1426
• Do not access files accidentely in interactive output by @​pmrv in pyiron/pyiron_atomistics#1348
• Update pyiron_base to 0.9.1 by @​jan-janssen in pyiron/pyiron_atomistics#1445

Full Changelog: https://github.com/pyiron/pyiron_atomistics/compare/pyiron_atomistics-0.6.0...pyiron_atomistics-0.6.1

pyiron_atomistics-0.6.0

What's Changed

• Switch from Sphinx Documentation to Jupyterbook by @​jan-janssen in pyiron/pyiron_atomistics#1405
• Remove nglview installation from mybinder setup by @​jan-janssen in pyiron/pyiron_atomistics#1406
• mybinder - remove test_benchmarks by @​jan-janssen in pyiron/pyiron_atomistics#1407
• fix links by @​jan-janssen in pyiron/pyiron_atomistics#1408
• move readme file by @​jan-janssen in pyiron/pyiron_atomistics#1409
• fix readme file by @​jan-janssen in pyiron/pyiron_atomistics#1410
• Fix readme image by @​jan-janssen in pyiron/pyiron_atomistics#1411
• Fix structure analysis in elastic matrix by @​jan-janssen in pyiron/pyiron_atomistics#1414
• Add Edit button to documentation by @​jan-janssen in pyiron/pyiron_atomistics#1415
• Update the data mining example by @​jan-janssen in pyiron/pyiron_atomistics#1416
• update pyiron_base to 0.8.4 by @​jan-janssen in pyiron/pyiron_atomistics#1417
• Bump mendeleev from 0.15.0 to 0.16.1 by @​dependabot in pyiron/pyiron_atomistics#1421
• patches in default LORBIT writing by @​ligerzero-ai in pyiron/pyiron_atomistics#1424
• Add OutcarCollectError and catch it in Vasp.collect by @​pmrv in pyiron/pyiron_atomistics#1394
• Bump mendeleev from 0.16.1 to 0.16.2 by @​dependabot in pyiron/pyiron_atomistics#1427
• Bump structuretoolkit from 0.0.22 to 0.0.23 by @​dependabot in pyiron/pyiron_atomistics#1428
• Bump scikit-learn from 1.4.2 to 1.5.0 by @​dependabot in pyiron/pyiron_atomistics#1429
• Bump scipy from 1.13.0 to 1.13.1 by @​dependabot in pyiron/pyiron_atomistics#1430
• Bump pylammpsmpi from 0.2.18 to 0.2.19 by @​dependabot in pyiron/pyiron_atomistics#1433
• Run CI on stacked pull requests by @​jan-janssen in pyiron/pyiron_atomistics#1437
• [patch] replace logger with snippets version by @​liamhuber in pyiron/pyiron_atomistics#1438
• [patch] use ImportAlarm from pyiron_snippets by @​liamhuber in pyiron/pyiron_atomistics#1431
• [patch] use deprecate from pyiron_snippets by @​liamhuber in pyiron/pyiron_atomistics#1432
• Update pyiron_base to 0.9.0 by @​jan-janssen in pyiron/pyiron_atomistics#1439

Full Changelog: https://github.com/pyiron/pyiron_atomistics/compare/pyiron_atomistics-0.5.4...pyiron_atomistics-0.6.0

pyiron_atomistics 0.5.4

What's Changed

• Fix phonopy example by @​jan-janssen in pyiron/pyiron_atomistics#1400
• Update pyiron_base to 0.8.3 by @​jan-janssen in pyiron/pyiron_atomistics#1401
• Fix bug for interface method reloading jobs by @​jan-janssen in pyiron/pyiron_atomistics#1402
• [minor] Remove duplicate cells by @​samwaseda in pyiron/pyiron_atomistics#1403
• Fix elastic matrix to be compatible with atomistics by @​jan-janssen in pyiron/pyiron_atomistics#1404

... (truncated)

Commits

• 64dc14d Merge pull request #1445 from pyiron/pyiron_base
• 8ac546d Format black
• 5f5402b Issue a warning when silencing not found output
• b77877a Fix sphinx unit test
• a551838 Use .content for Sphinx
• 7f91818 From none the exception to keep trace clean.
• dbe84d8 Same for generic outputs
• 18420ce Do not access files accidentely in interactive output
• 0f76f7b Update environment.yml
• 013688a Update environment-docs.yml
• Additional commits viewable in compare view

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[github-actions[bot]]

:point_left: Launch a binder notebook on branch pyiron/ironflow/dependabot/pip/pyiron-atomistics-0.6.1