Closed jan-janssen closed 5 months ago
@pmrv Most likely this is related to https://github.com/pyiron/pyiron_base/pull/1392 , https://github.com/pyiron/pyiron_base/pull/1394 or https://github.com/pyiron/pyiron_base/pull/1397 .
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ERROR: test_dump_parser_water (lammps.test_base.TestLammps.test_dump_parser_water)
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Traceback (most recent call last):
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/tests/lammps/test_base.py", line 237, in test_dump_parser_water
self.job.run()
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/utils/deprecate.py", line 171, in decorated
return function(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/generic.py", line 781, in run
self._run_if_collect()
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/generic.py", line 1344, in _run_if_collect
run_job_with_status_collect(job=self)
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/runfunction.py", line 223, in run_job_with_status_collect
job.collect_output()
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/interactive.py", line 509, in collect_output
super(LammpsInteractive, self).collect_output()
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/base.py", line 454, in collect_output
data_dict=self.collect_output_parser(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/base.py", line 430, in collect_output_parser
return parse_lammps_output(
^^^^^^^^^^^^^^^^^^^^
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/output.py", line 66, in parse_lammps_output
np.array(dump_dict.pop("steps"), dtype=int), label="steps"
^^^^^^^^^^^^^^^^^^^^^^
KeyError: 'steps'
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ERROR: test_lammps_water (lammps.test_base.TestLammps.test_lammps_water)
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Traceback (most recent call last):
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/tests/lammps/test_base.py", line 189, in test_lammps_water
self.job.run()
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/utils/deprecate.py", line 171, in decorated
return function(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/generic.py", line 781, in run
self._run_if_collect()
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/generic.py", line 1344, in _run_if_collect
run_job_with_status_collect(job=self)
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/runfunction.py", line 223, in run_job_with_status_collect
job.collect_output()
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/interactive.py", line 509, in collect_output
super(LammpsInteractive, self).collect_output()
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/base.py", line 454, in collect_output
data_dict=self.collect_output_parser(
^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/base.py", line 430, in collect_output_parser
return parse_lammps_output(
^^^^^^^^^^^^^^^^^^^^
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/lammps/output.py", line 66, in parse_lammps_output
np.array(dump_dict.pop("steps"), dtype=int), label="steps"
^^^^^^^^^^^^^^^^^^^^^^
KeyError: 'steps'
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ERROR: test_load_guess_group (sphinx.test_base.TestSphinx.test_load_guess_group)
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Traceback (most recent call last):
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/tests/sphinx/test_base.py", line 442, in test_load_guess_group
self.assertEqual(guess.rho.file, '"' + rho_file + '"')
^^^^^^^^^^^^^^
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/storage/datacontainer.py", line 366, in __getattr__
raise AttributeError(name) from None
AttributeError: file
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ERROR: test_run_complete (vasp.test_vasp.TestVasp.test_run_complete)
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Traceback (most recent call last):
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/tests/vasp/test_vasp.py", line 330, in test_run_complete
self.job_complete.run()
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/utils/deprecate.py", line 171, in decorated
return function(*args, **kwargs)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/generic.py", line 781, in run
self._run_if_collect()
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/generic.py", line 1344, in _run_if_collect
run_job_with_status_collect(job=self)
File "/usr/share/miniconda3/envs/my-env/lib/python3.11/site-packages/pyiron_base/jobs/job/runfunction.py", line 223, in run_job_with_status_collect
job.collect_output()
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/vasp/base.py", line 472, in collect_output
data_dict=self.collect_output_parser(cwd=self.working_directory),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/vasp/base.py", line 421, in collect_output_parser
self._output_parser.collect(
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/pyiron_atomistics/vasp/base.py", line 2011, in collect
raise IOError("Either the OUTCAR or vasprun.xml files need to be present")
OSError: Either the OUTCAR or vasprun.xml files need to be present
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FAIL: test_calc_static (sphinx.test_base.TestSphinx.test_calc_static)
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Traceback (most recent call last):
File "/home/runner/work/pyiron_atomistics/pyiron_atomistics/tests/sphinx/test_base.py", line 331, in test_calc_static
self.assertTrue("keepRho" in self.sphinx.input.sphinx.main.to_sphinx())
AssertionError: False is not true
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Totals | |
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Change from base Build 8440425487: | 0.0% |
Covered Lines: | 14201 |
Relevant Lines: | 15228 |
This bug is hopefully fixed in https://github.com/pyiron/pyiron_base/pull/1399