pyiron / pyiron_gui

Extended graphical user interface (GUI) for pyiron the integrated development environment (IDE)
https://pyiron.org
BSD 3-Clause "New" or "Revised" License
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Bump matplotlib from 3.8.1 to 3.8.2 #275

Closed dependabot[bot] closed 10 months ago

dependabot[bot] commented 10 months ago

Bumps matplotlib from 3.8.1 to 3.8.2.

Release notes

Sourced from matplotlib's releases.

REL: v3.8.2

This is the second bugfix release of the 3.8 series.

Highlights of this release include:

  • Fix a segfault in the MacOS backend when running on Python 3.12
  • Fix Contour labeling manual positions selecting incorrect contours.
  • Various documentation improvements
Commits
  • eb02b10 REL: v3.8.2
  • dfb7a46 Github stats fo v3.8.2
  • 8023978 Merge branch 'v3.8.1-doc' into v3.8.x
  • acae9bf Merge pull request #27339 from meeseeksmachine/auto-backport-of-pr-27299-on-v...
  • 95743f0 Merge pull request #27338 from meeseeksmachine/auto-backport-of-pr-27334-on-v...
  • cfb494f Backport PR #27299: [MNT] swap xkcd script for humor sans
  • 26fd30a Backport PR #27334: Omit MOVETO lines from nearest contour logic
  • 38a0e94 Merge pull request #27324 from meeseeksmachine/auto-backport-of-pr-27323-on-v...
  • 2b58748 Backport PR #27323: [DOC] Minor fixes for savefig-docstring
  • 94c0cfe Merge pull request #27314 from meeseeksmachine/auto-backport-of-pr-27312-on-v...
  • Additional commits viewable in compare view


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jan-janssen commented 10 months ago
======================================================================
ERROR: test_gui (wrapper.test_wrapper.TestMurnaghanWidget) [polynomial with fit_order=3]
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/runner/work/pyiron_gui/pyiron_gui/tests/wrapper/test_wrapper.py", line 233, in test_gui
    self.pw_murn._on_click_apply_button("NoButtonSinceNotNeeded")
  File "/home/runner/work/pyiron_gui/pyiron_gui/pyiron_gui/wrapper/widgets.py", line 174, in _on_click_apply_button
    self.refresh()
  File "/home/runner/work/pyiron_gui/pyiron_gui/pyiron_gui/wrapper/widgets.py", line 178, in refresh
    self._update_box()
  File "/home/runner/work/pyiron_gui/pyiron_gui/pyiron_gui/wrapper/widgets.py", line 257, in _update_box
    self._obj.plot()
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pyiron_atomistics/atomistics/master/murnaghan.py", line 381, in plot
    self.fit_polynomial(fit_order=self.input["fit_order"])
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pyiron_atomistics/atomistics/master/murnaghan.py", line 207, in fit_polynomial
    return self.poly_fit(fit_order=fit_order, vol_erg_dic=vol_erg_dic)
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pyiron_atomistics/atomistics/master/murnaghan.py", line 271, in poly_fit
    self._store_fit_in_hdf(fit_dict=fit_dict)
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pyiron_atomistics/atomistics/master/murnaghan.py", line 233, in _store_fit_in_hdf
    self._final_struct_to_hdf()
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pyiron_atomistics/atomistics/master/murnaghan.py", line 220, in _final_struct_to_hdf
    structure = self.get_structure(frame=-1)
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pyiron_base/utils/deprecate.py", line 171, in decorated
    return function(*args, **kwargs)
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pyiron_atomistics/atomistics/structure/has_structure.py", line 117, in get_structure
    return self._get_structure(frame=frame, wrap_atoms=wrap_atoms)
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/pyiron_atomistics/atomistics/master/murnaghan.py", line 468, in _get_structure
    return _strain_axes(self.structure, self.input["axes"], vol_strain)
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/atomistics/workflows/evcurve/workflow.py", line 17, in _strain_axes
    axes = np.array([a in axes for a in ("x", "y", "z")])
  File "/usr/share/miniconda3/envs/test/lib/python3.10/site-packages/atomistics/workflows/evcurve/workflow.py", line 17, in <listcomp>
    axes = np.array([a in axes for a in ("x", "y", "z")])
TypeError: argument of type 'numpy.float64' is not iterable
jan-janssen commented 10 months ago

This was addressed in https://github.com/pyiron/pyiron_atomistics/pull/1217

dependabot[bot] commented 10 months ago

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