pyiron / pysqa

Simple HPC queuing system adapter for Python on based jinja templates to automate the submission script creation.
https://pysqa.readthedocs.io
BSD 3-Clause "New" or "Revised" License
23 stars 7 forks source link

Move validation routines to separate submodule #336

Closed jan-janssen closed 1 month ago

jan-janssen commented 1 month ago

Summary by CodeRabbit

coderabbitai[bot] commented 1 month ago

Walkthrough

The changes involve refactoring the BasisQueueAdapter class in pysqa/utils/basic.py by removing several internal utility methods and replacing them with direct calls to new functions in pysqa/utils/validate.py. This restructuring maintains the original functionality while enhancing the clarity and modularity of the code. Additionally, corresponding updates were made to the test files to reflect these changes, ensuring that tests now utilize the new utility functions instead of the removed methods.

Changes

Files Change Summary
pysqa/utils/basic.py Removed internal utility methods from BasisQueueAdapter and replaced them with calls to functions in pysqa/utils/validate.py.
pysqa/utils/validate.py Introduced new utility functions for value validation and memory specification processing, including value_error_if_none, value_in_range, _is_memory_string, and _memory_spec_string_to_value.
tests/test_basic.py Updated test cases to replace calls to removed methods with new utility functions, ensuring assertions remain consistent.
tests/test_sge.py Refactored tests to call the new value_in_range function directly instead of the private method from BasisQueueAdapter, updating assertions accordingly.

Sequence Diagram(s)

sequenceDiagram
    participant A as User
    participant B as BasisQueueAdapter
    participant C as ValidateFunctions

    A->>B: Call check_queue_parameters()
    B->>C: Call value_error_if_none(value)
    C-->>B: Return validation result
    B->>C: Call value_in_range(value, min, max)
    C-->>B: Return range check result
    B-->>A: Return final result

Poem

🐇 In the code where rabbits hop,
Functions flourish, never stop.
Old methods fade, new paths we trace,
Validation shines in its rightful place.
With every change, we dance and play,
Hopping forward, come what may! 🌟


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