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pykeio / ort

Fast ML inference & training for Rust with ONNX Runtime
https://ort.pyke.io/
Apache License 2.0
859 stars 100 forks source link

linking with `cc` failed: exit status: 1 #268

Closed ahmadbrainworks closed 2 months ago

ahmadbrainworks commented 2 months ago

I'm having linking with cc failed: exit status: 1 error when trying to run cargo run, cargo build, in-fact anything cargo.

log::

error: linking with `cc` failed: exit status: 1
  |
  = note: LC_ALL="C" PATH="/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/bin:/home/ahmad/.pyenv/versions/3.12.4/bin:/home/ahmad/.pyenv/shims:/home/ahmad/.pyenv/bin:/home/ahmad/.pyenv/versions/3.12.4/bin:/home/ahmad/.pyenv/bin:/home/ahmad/.nvm/versions/node/v18.17.0/bin:/home/ahmad/.cargo/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin:/snap/bin" VSLANG="1033" "cc" "-m64" "/tmp/rustcFXhhVj/symbols.o" "/home/ahmad/dev/lab/ai/target/debug/deps/ai-05712d882572ba06.00eetkj63ffo83hcw92q39wdr.rcgu.o" "/home/ahmad/dev/lab/ai/target/debug/deps/ai-05712d882572ba06.02okltk51vmodlq8bnvkzsh5u.rcgu.o" 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"/home/ahmad/dev/lab/ai/target/debug/deps/libunicode_normalization-65d264346b8ccdf5.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libtinyvec-577e4c0236cc740b.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libtinyvec_macros-c12cee6632de4a31.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libunicode_bidi-98f019b73d41c11b.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libform_urlencoded-fd2d2c0efb0c7fb7.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libpercent_encoding-f34b63eb41f0a092.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libndarray-4938876b677ba693.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libmatrixmultiply-782d2837d7159a65.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libnum_complex-b0e8cde60e71cd77.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libnum_integer-6e06341638d8993f.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libnum_traits-7bbbd36805f87939.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/librawpointer-f6faf7c0301b7af7.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libthiserror-febd105b8a8072a0.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libtracing-a91cc1f59f4269eb.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libpin_project_lite-fb729104c225308b.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libtracing_core-ea979041f533d552.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libonce_cell-a181560b04e888f8.rlib" "/home/ahmad/dev/lab/ai/target/debug/deps/libort_sys-0f7391abf9179aa7.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-52417a9a08ba8fb9.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-1b238e97929fdc18.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-3692c2663daa48a5.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libmemchr-5c1e2d61611c0240.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-e55c5186b9bbabcb.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-7911d2fe92903c6c.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-c03510cdc48cfa52.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-7ec6f3765287c7b7.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-ab3f1b788cf79cfc.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-6db4226b4e34b1a6.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-f5bb1a38d410fa1e.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-e585efe74c64604d.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-03f8e93b59ffc316.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-669e9182bfe197a6.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-64b53226be979181.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-26921ac7e6a44d2b.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-6703049be165ebf1.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-04bfdf6b094564ce.rlib" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-6648dc218e522d87.rlib" "-Wl,-Bdynamic" "-lc" "-lm" "-lrt" "-lpthread" "-lstdc++" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-L" "/home/ahmad/.rustup/toolchains/stable-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/home/ahmad/dev/lab/ai/target/debug/deps/ai-05712d882572ba06" "-Wl,--gc-sections" "-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs"
  = note: /usr/bin/ld: /home/ahmad/dev/lab/ai/target/debug/deps/libort_sys-0f7391abf9179aa7.rlib(onnxruntime_c_api.cc.o): in function `OrtApis::ReleasePrepackedWeightsContainer(OrtPrepackedWeightsContainer*)':
          onnxruntime_c_api.cc:(.text._ZN7OrtApis32ReleasePrepackedWeightsContainerEP28OrtPrepackedWeightsContainer+0x253): undefined reference to `__libc_single_threaded'
          /usr/bin/ld: /home/ahmad/dev/lab/ai/target/debug/deps/libort_sys-0f7391abf9179aa7.rlib(onnxruntime_c_api.cc.o): in function `std::unique_ptr<OrtValue, std::default_delete<OrtValue> >& absl::lts_20240116::inlined_vector_internal::Storage<std::unique_ptr<OrtValue, std::default_delete<OrtValue> >, 6ul, std::allocator<std::unique_ptr<OrtValue, std::default_delete<OrtValue> > > >::EmplaceBackSlow<std::unique_ptr<OrtValue, std::default_delete<OrtValue> > >(std::unique_ptr<OrtValue, std::default_delete<OrtValue> >&&) [clone .isra.0]':
          onnxruntime_c_api.cc:(.text._ZN4absl12lts_2024011623inlined_vector_internal7StorageISt10unique_ptrI8OrtValueSt14default_deleteIS4_EELm6ESaIS7_EE15EmplaceBackSlowIJS7_EEERS7_DpOT_.isra.0+0xc8): undefined reference to `__libc_single_threaded'
          /usr/bin/ld: onnxruntime_c_api.cc:(.text._ZN4absl12lts_2024011623inlined_vector_internal7StorageISt10unique_ptrI8OrtValueSt14default_deleteIS4_EELm6ESaIS7_EE15EmplaceBackSlowIJS7_EEERS7_DpOT_.isra.0+0x13c): undefined reference to `__libc_single_threaded'
          /usr/bin/ld: /home/ahmad/dev/lab/ai/target/debug/deps/libort_sys-0f7391abf9179aa7.rlib(onnxruntime_c_api.cc.o): in function `OrtApis::ReleaseValue(OrtValue*)':
          onnxruntime_c_api.cc:(.text._ZN7OrtApis12ReleaseValueEP8OrtValue+0x1c): undefined reference to `__libc_single_threaded'
          /usr/bin/ld: /home/ahmad/dev/lab/ai/target/debug/deps/libort_sys-0f7391abf9179aa7.rlib(onnxruntime_c_api.cc.o): in function `std::default_delete<OrtValue>::operator()(OrtValue*) const [clone .constprop.0]':
          onnxruntime_c_api.cc:(.text._ZNKSt14default_deleteI8OrtValueEclEPS0_.constprop.0+0x18): undefined reference to `__libc_single_threaded'
          /usr/bin/ld: /home/ahmad/dev/lab/ai/target/debug/deps/libort_sys-0f7391abf9179aa7.rlib(onnxruntime_c_api.cc.o):onnxruntime_c_api.cc:(.text._ZN7OrtApis16ReleaseIoBindingEP12OrtIoBinding+0x75): more undefined references to `__libc_single_threaded' follow
          collect2: error: ld returned 1 exit status

  = note: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified
  = note: use the `-l` flag to specify native libraries to link
  = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#rustc-link-lib)

error: could not compile `ai` (bin "ai") due to 1 previous error

gcc version::

ahmad@m15-R6:~/dev/lab/ai$ gcc --version
gcc (Ubuntu 11.4.0-2ubuntu1~20.04) 11.4.0
Copyright (C) 2021 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

g++11 is installed .

I am testing out https://github.com/pykeio/ort/blob/main/examples/gpt2/build.rs

decahedron1 commented 2 months ago

glibc ≥ 2.35 (Ubuntu 22.04) is required for prebuilt binaries. You could compile ONNX Runtime from source on Ubuntu 20.04 and link ort to your custom build.