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pylelab / MRTModSeq

Modification profiling with Marathon RT
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inconsistent predict_5_8_guanine_amp.arff #2

Closed kad-ecoli closed 2 years ago

kad-ecoli commented 2 years ago

According to line 287 of https://github.com/pylelab/MRTModSeq/blob/main/Amplified_Prediction_script%20copy.Rmd

tx_line15 <- gsub(pattern = "'\\?'", replace = "none,Gm", x = tx[15])

The output labels should be

@attribute Modifications {none,Gm}

However, in https://github.com/pylelab/MRTModSeq/blob/main/sample%205.8S%20rRNA%20data%20input%20and%20output/amplified_prediction_script_OUTPUTS/predict_5_8_guanine_amp.arff, the output label is actually

@attribute Modifications {Gm,none}

Is this a bug?

pylelab commented 2 years ago

yes! fixing it now.