How to align multiple, multimeric pdbs?

[johnnytam100]

Hi Pylelab! May I know if USalign can do this?

     -mm  Multimeric alignment option:
          0: (default) alignment of two monomeric structures
          1: alignment of two multi-chain oligomeric structures
          2: alignment of individual chains to an oligomeric structure
             $ USalign -dir1 monomers/ list oligomer.pdb -ter 0 -mm 2
          3: alignment of circularly permuted structure
          4: alignment of multiple monomeric chains into a consensus alignment
             $ USalign -dir chains/ list -suffix .pdb -mm 4
          To use -mm 1 or -mm 2, '-ter' option must be 0 or 1.

[kad-ecoli]

This not implemented. Sorry.