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Bayesian Modeling and Probabilistic Programming in Python
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BUG: Unable to import pymc - No module named 'pymc.model' #7432

Open jankaWIS opened 1 month ago

jankaWIS commented 1 month ago

Describe the issue:

Hi,

this seems like a duplicate of this issue: https://github.com/pymc-devs/pymc/issues/6439

But I encountered it through a direct installation and no dependency, so I'm opening it as a separate issue.

I followed the installation instructions to install pymc.

conda create -c conda-forge -n pymc_env "pymc>=5"

After the installation, I activated the newly created environment: conda activate pymc_env

and opened up a jupyter notebook. When I try to import pymc, I'm getting the error message that the pymc.model module does not exist. I tried to search bugs, forum, stack overflow, but I couldn't find a similar issue. Could you please assist with it?

Reproduceable code example:

I didn't get further than:

import pandas as pd
import pymc as pm

Error message:

---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
/var/folders/bx/tb4883l53hdd3zp2y0nyy_4m0000gp/T/ipykernel_2653/4087235605.py in <module>
      1 import pandas as pd
----> 2 import pymc as pm
      3 
      4 dat = df_dic['randomised_matchedS'].copy()
      5 

~/anaconda3/lib/python3.8/site-packages/pymc/__init__.py in <module>
     30 from .CommonDeterministics import *
     31 from .NumpyDeterministics import *
---> 32 from .distributions import *
     33 from .Model import *
     34 from .StepMethods import *

~/anaconda3/lib/python3.8/site-packages/pymc/distributions/__init__.py in <module>
     21 )
     22 
---> 23 from pymc.distributions.bound import Bound
     24 from pymc.distributions.continuous import (
     25     AsymmetricLaplace,

~/anaconda3/lib/python3.8/site-packages/pymc/distributions/bound.py in <module>
     21 
     22 from pymc.aesaraf import floatX, intX
---> 23 from pymc.distributions.continuous import BoundedContinuous
     24 from pymc.distributions.dist_math import bound
     25 from pymc.distributions.distribution import Continuous, Discrete

~/anaconda3/lib/python3.8/site-packages/pymc/distributions/continuous.py in <module>
     86     zvalue,
     87 )
---> 88 from pymc.distributions.distribution import Continuous
     89 from pymc.distributions.shape_utils import rv_size_is_none
     90 from pymc.math import invlogit, logdiffexp, logit

~/anaconda3/lib/python3.8/site-packages/pymc/distributions/distribution.py in <module>
     44     resize_from_observed,
     45 )
---> 46 from pymc.printing import str_for_dist
     47 from pymc.util import UNSET
     48 from pymc.vartypes import string_types

~/anaconda3/lib/python3.8/site-packages/pymc/printing.py in <module>
     23 from aesara.tensor.var import TensorConstant
     24 
---> 25 from pymc.model import Model
     26 
     27 __all__ = [

ModuleNotFoundError: No module named 'pymc.model'

PyMC version information:

I can't provide pymc version as it gives me the same error as above when trying to import. I installed it using conda as in the instructions (see above).

Python Version: 3.8.11 (default, Aug 6 2021, 08:56:27) [Clang 10.0.0 ] Aesara Version: 2.2.6 Operating System: Darwin 23.5.0

Context for the issue:

I can't import the package, so it affects me and my work quite significantly :).

ricardoV94 commented 1 month ago

It doesn't seem like it's installing pymc v5 because Aesara is showing up even though that's a v4 dependency.

ricardoV94 commented 1 month ago

Are you sure your notebook environment is linked to the pymc environment you created?

Usually you need to first create a custom ipython kernel with something like python -m pip ipykernel install --user --name='pymc-dev' and then select that kernel in the jupyter environment.

That python command that installs the ipython kernel should use the newly installed pymc-dev environment

jankaWIS commented 1 month ago

Yes, I'm sure. I did two things:

1) Activated the vevn. Then I opened a jupyter notebook directly from the venv and checked that the kernel is the right one.

2) Added the kernel to jupyter notebook via python -m ipykernel install --user --name=pymc_env and then opened regular jupyter and switched kernel to this env.

Interestingly thou, now when I was creating this screenshot for you to show you that I have the correct environment, I started getting a different error:

image

---------------------------------------------------------------------------
NoSectionError                            Traceback (most recent call last)
~/anaconda3/lib/python3.8/site-packages/aesara/configparser.py in fetch_val_for_key(self, key, delete_key)
    238             try:
--> 239                 return self._aesara_cfg.get(section, option)
    240             except InterpolationError:

~/anaconda3/lib/python3.8/configparser.py in get(self, section, option, raw, vars, fallback)
    780         try:
--> 781             d = self._unify_values(section, vars)
    782         except NoSectionError:

~/anaconda3/lib/python3.8/configparser.py in _unify_values(self, section, vars)
   1148             if section != self.default_section:
-> 1149                 raise NoSectionError(section) from None
   1150         # Update with the entry specific variables

NoSectionError: No section: 'blas'

During handling of the above exception, another exception occurred:

KeyError                                  Traceback (most recent call last)
~/anaconda3/lib/python3.8/site-packages/aesara/configparser.py in __get__(self, cls, type_, delete_key)
    354             try:
--> 355                 val_str = cls.fetch_val_for_key(self.name, delete_key=delete_key)
    356                 self.is_default = False

~/anaconda3/lib/python3.8/site-packages/aesara/configparser.py in fetch_val_for_key(self, key, delete_key)
    242         except (NoOptionError, NoSectionError):
--> 243             raise KeyError(key)
    244 

KeyError: 'blas__ldflags'

During handling of the above exception, another exception occurred:

AttributeError                            Traceback (most recent call last)
/var/folders/bx/tb4883l53hdd3zp2y0nyy_4m0000gp/T/ipykernel_6749/245169207.py in <module>
----> 1 import pymc
      2 print("PyMC Version:", pymc.__version__)

~/anaconda3/lib/python3.8/site-packages/pymc/__init__.py in <module>
     30 from .CommonDeterministics import *
     31 from .NumpyDeterministics import *
---> 32 from .distributions import *
     33 from .Model import *
     34 from .StepMethods import *

~/anaconda3/lib/python3.8/site-packages/pymc/distributions/__init__.py in <module>
     13 #   limitations under the License.
     14 
---> 15 from pymc.distributions.logprob import (  # isort:skip
     16     logcdf,
     17     logp,

~/anaconda3/lib/python3.8/site-packages/pymc/distributions/logprob.py in <module>
     18 from typing import Dict, Optional, Union
     19 
---> 20 import aesara.tensor as at
     21 import numpy as np
     22 

~/anaconda3/lib/python3.8/site-packages/aesara/__init__.py in <module>
     77 __api_version__ = 1
     78 
---> 79 from aesara import scalar, tensor
     80 from aesara.compile import (
     81     In,

~/anaconda3/lib/python3.8/site-packages/aesara/tensor/__init__.py in <module>
     94 # adds shared-variable constructors
     95 from aesara.tensor import sharedvar  # noqa
---> 96 from aesara.tensor import (  # noqa
     97     basic_opt,
     98     blas,

~/anaconda3/lib/python3.8/site-packages/aesara/tensor/blas.py in <module>
    164 from aesara.tensor import basic as aet
    165 from aesara.tensor.basic_opt import local_dimshuffle_lift
--> 166 from aesara.tensor.blas_headers import blas_header_text, blas_header_version
    167 from aesara.tensor.elemwise import DimShuffle, Elemwise
    168 from aesara.tensor.exceptions import NotScalarConstantError

~/anaconda3/lib/python3.8/site-packages/aesara/tensor/blas_headers.py in <module>
   1013 
   1014 
-> 1015 if not config.blas__ldflags:
   1016     _logger.warning("Using NumPy C-API based implementation for BLAS functions.")
   1017 

~/anaconda3/lib/python3.8/site-packages/aesara/configparser.py in __get__(self, cls, type_, delete_key)
    357             except KeyError:
    358                 if callable(self.default):
--> 359                     val_str = self.default()
    360                 else:
    361                     val_str = self.default

~/anaconda3/lib/python3.8/site-packages/aesara/link/c/cmodule.py in default_blas_ldflags()
   2626             # If the old private interface is available use it as it
   2627             # don't print information to the user.
-> 2628             blas_info = numpy.distutils.__config__.blas_opt_info
   2629         else:
   2630             # We do this import only here, as in some setup, if we

AttributeError: module 'numpy.distutils.__config__' has no attribute 'blas_opt_info'
ricardoV94 commented 1 month ago

It's definitely not installing the right version of PyMC. Can you try importing pymc from the terminal after activating the environment (instead of form a jupyter notebook)?

Also what is the output of conda list?

jankaWIS commented 1 month ago

That ... works? Weird. Took forever though, like a minute.

(pymc_env) bash-3.2$ python
Python 3.12.4 | packaged by conda-forge | (main, Jun 17 2024, 10:11:10) [Clang 16.0.6 ] on darwin
Type "help", "copyright", "credits" or "license" for more information.
>>> import pymc as pm
WARNING (pytensor.tensor.blas): Using NumPy C-API based implementation for BLAS functions.
Matplotlib is building the font cache; this may take a moment.
>>>

This ss the output of conda list:

(pymc_env) bash-3.2$ conda list
# packages in environment at /Users/jan/anaconda3/envs/pymc_env:
#
# Name                    Version                   Build  Channel
arviz                     0.19.0             pyhd8ed1ab_0    conda-forge
atk-1.0                   2.38.0               h4bec284_2    conda-forge
brotli                    1.1.0                h0dc2134_1    conda-forge
brotli-bin                1.1.0                h0dc2134_1    conda-forge
bzip2                     1.0.8                hfdf4475_7    conda-forge
c-ares                    1.32.3               h51dda26_0    conda-forge
ca-certificates           2024.7.4             h8857fd0_0    conda-forge
cached-property           1.5.2                hd8ed1ab_1    conda-forge
cached_property           1.5.2              pyha770c72_1    conda-forge
cachetools                5.4.0              pyhd8ed1ab_0    conda-forge
cairo                     1.18.0               h9f650ed_2    conda-forge
certifi                   2024.7.4           pyhd8ed1ab_0    conda-forge
cloudpickle               3.0.0              pyhd8ed1ab_0    conda-forge
cons                      0.4.6              pyhd8ed1ab_0    conda-forge
contourpy                 1.2.1           py312h9230928_0    conda-forge
cycler                    0.12.1             pyhd8ed1ab_0    conda-forge
dm-tree                   0.1.8           py312hf6c9040_4    conda-forge
etuples                   0.3.9              pyhd8ed1ab_0    conda-forge
expat                     2.6.2                h73e2aa4_0    conda-forge
filelock                  3.15.4             pyhd8ed1ab_0    conda-forge
font-ttf-dejavu-sans-mono 2.37                 hab24e00_0    conda-forge
font-ttf-inconsolata      3.000                h77eed37_0    conda-forge
font-ttf-source-code-pro  2.038                h77eed37_0    conda-forge
font-ttf-ubuntu           0.83                 h77eed37_2    conda-forge
fontconfig                2.14.2               h5bb23bf_0    conda-forge
fonts-conda-ecosystem     1                             0    conda-forge
fonts-conda-forge         1                             0    conda-forge
fonttools                 4.53.1          py312hbd25219_0    conda-forge
freetype                  2.12.1               h60636b9_2    conda-forge
fribidi                   1.0.10               hbcb3906_0    conda-forge
gdk-pixbuf                2.42.12              ha587570_0    conda-forge
giflib                    5.2.2                h10d778d_0    conda-forge
graphite2                 1.3.13            h73e2aa4_1003    conda-forge
graphviz                  11.0.0               hc9017ca_0    conda-forge
gtk2                      2.24.33              h2c15c3c_5    conda-forge
gts                       0.7.6                h53e17e3_4    conda-forge
h5netcdf                  1.3.0              pyhd8ed1ab_0    conda-forge
h5py                      3.11.0          nompi_py312hfc94b03_102    conda-forge
harfbuzz                  9.0.0                h053f038_0    conda-forge
hdf5                      1.14.3          nompi_h687a608_105    conda-forge
icu                       73.2                 hf5e326d_0    conda-forge
kiwisolver                1.4.5           py312h49ebfd2_1    conda-forge
krb5                      1.21.3               h37d8d59_0    conda-forge
lcms2                     2.16                 ha2f27b4_0    conda-forge
lerc                      4.0.0                hb486fe8_0    conda-forge
libabseil                 20240116.2      cxx17_hf036a51_1    conda-forge
libaec                    1.1.3                h73e2aa4_0    conda-forge
libblas                   3.9.0           22_osx64_openblas    conda-forge
libbrotlicommon           1.1.0                h0dc2134_1    conda-forge
libbrotlidec              1.1.0                h0dc2134_1    conda-forge
libbrotlienc              1.1.0                h0dc2134_1    conda-forge
libcblas                  3.9.0           22_osx64_openblas    conda-forge
libcurl                   8.9.0                hfcf2730_0    conda-forge
libcxx                    18.1.8               hef8daea_1    conda-forge
libdeflate                1.20                 h49d49c5_0    conda-forge
libedit                   3.1.20191231         h0678c8f_2    conda-forge
libev                     4.33                 h10d778d_2    conda-forge
libexpat                  2.6.2                h73e2aa4_0    conda-forge
libffi                    3.4.2                h0d85af4_5    conda-forge
libgd                     2.3.3                h0dceb68_9    conda-forge
libgfortran               5.0.0           13_2_0_h97931a8_3    conda-forge
libgfortran5              13.2.0               h2873a65_3    conda-forge
libglib                   2.80.3               h736d271_1    conda-forge
libiconv                  1.17                 hd75f5a5_2    conda-forge
libintl                   0.22.5               h5ff76d1_2    conda-forge
libjpeg-turbo             3.0.0                h0dc2134_1    conda-forge
liblapack                 3.9.0           22_osx64_openblas    conda-forge
libnghttp2                1.58.0               h64cf6d3_1    conda-forge
libopenblas               0.3.27          openmp_h8869122_1    conda-forge
libpng                    1.6.43               h92b6c6a_0    conda-forge
librsvg                   2.58.2               h902c40a_1    conda-forge
libsqlite                 3.46.0               h1b8f9f3_0    conda-forge
libssh2                   1.11.0               hd019ec5_0    conda-forge
libtiff                   4.6.0                h129831d_3    conda-forge
libwebp                   1.4.0                hc207709_0    conda-forge
libwebp-base              1.4.0                h10d778d_0    conda-forge
libxcb                    1.16                 h0dc2134_0    conda-forge
libxml2                   2.12.7               hc603aa4_3    conda-forge
libzlib                   1.3.1                h87427d6_1    conda-forge
llvm-openmp               18.1.8               h15ab845_0    conda-forge
logical-unification       0.4.6              pyhd8ed1ab_0    conda-forge
markdown-it-py            3.0.0              pyhd8ed1ab_0    conda-forge
matplotlib-base           3.9.1           py312h0d5aeb7_0    conda-forge
mdurl                     0.1.2              pyhd8ed1ab_0    conda-forge
minikanren                1.0.3              pyhd8ed1ab_0    conda-forge
multipledispatch          0.6.0              pyhd8ed1ab_1    conda-forge
munkres                   1.1.4              pyh9f0ad1d_0    conda-forge
ncurses                   6.5                  h5846eda_0    conda-forge
numpy                     1.26.4          py312he3a82b2_0    conda-forge
openjpeg                  2.5.2                h7310d3a_0    conda-forge
openssl                   3.3.1                h87427d6_2    conda-forge
packaging                 24.1               pyhd8ed1ab_0    conda-forge
pandas                    2.2.2           py312h1171441_1    conda-forge
pango                     1.54.0               h115fe74_1    conda-forge
pcre2                     10.44                h7634a1b_0    conda-forge
pillow                    10.4.0          py312hbd70edc_0    conda-forge
pip                       24.0               pyhd8ed1ab_0    conda-forge
pixman                    0.43.4               h73e2aa4_0    conda-forge
pthread-stubs             0.4               hc929b4f_1001    conda-forge
pygments                  2.18.0             pyhd8ed1ab_0    conda-forge
pymc                      5.16.2               hd8ed1ab_0    conda-forge
pymc-base                 5.16.2             pyhd8ed1ab_0    conda-forge
pyparsing                 3.1.2              pyhd8ed1ab_0    conda-forge
pytensor                  2.23.0          py312h77d3abe_0  
pytensor-base             2.25.2          py312hf1ba2cd_0    conda-forge
python                    3.12.4          h37a9e06_0_cpython    conda-forge
python-dateutil           2.9.0              pyhd8ed1ab_0    conda-forge
python-graphviz           0.20.3             pyh717bed2_0    conda-forge
python-tzdata             2024.1             pyhd8ed1ab_0    conda-forge
python_abi                3.12                    4_cp312    conda-forge
pytz                      2024.1             pyhd8ed1ab_0    conda-forge
qhull                     2020.2               h3c5361c_5    conda-forge
readline                  8.2                  h9e318b2_1    conda-forge
rich                      13.7.1             pyhd8ed1ab_0    conda-forge
scipy                     1.13.1          py312hb9702fa_0    conda-forge
setuptools                71.0.4             pyhd8ed1ab_0    conda-forge
six                       1.16.0             pyh6c4a22f_0    conda-forge
threadpoolctl             3.5.0              pyhc1e730c_0    conda-forge
tk                        8.6.13               h1abcd95_1    conda-forge
toolz                     0.12.1             pyhd8ed1ab_0    conda-forge
typing-extensions         4.12.2               hd8ed1ab_0    conda-forge
typing_extensions         4.12.2             pyha770c72_0    conda-forge
tzdata                    2024a                h0c530f3_0    conda-forge
wheel                     0.43.0             pyhd8ed1ab_1    conda-forge
xarray                    2024.6.0           pyhd8ed1ab_1    conda-forge
xarray-einstats           0.7.0              pyhd8ed1ab_0    conda-forge
xorg-libxau               1.0.11               h0dc2134_0    conda-forge
xorg-libxdmcp             1.1.3                h35c211d_0    conda-forge
xz                        5.2.6                h775f41a_0    conda-forge
zlib                      1.3.1                h87427d6_1    conda-forge
zstd                      1.5.6                h915ae27_0    conda-forge
jankaWIS commented 1 month ago

I have some updates. I tried to add the kernel directly from the environment, which needed installation of ipykernel. After that, however, it seems to be able to import PYMC.

(base) bash-3.2$ conda activate pymc_env
(pymc_env) bash-3.2$ conda install ipykernel
(pymc_env) bash-3.2$ python -m ipykernel install --user --name=pymc_env

and then open jupyter notebook

import pymc

print("PyMC Version:", pymc.__version__)

it works:

WARNING (pytensor.tensor.blas): Using NumPy C-API based implementation for BLAS functions.

PyMC Version: 5.16.2

But when I try running something, like the easy example with the following code, I'm running into new errors.

import arviz as az
import matplotlib.pyplot as plt
import numpy as np
import pandas as pd
import pymc as pm
import xarray as xr

from pymc import HalfCauchy, Model, Normal, sample

print(f"Running on PyMC v{pm.__version__}")

RANDOM_SEED = 8927
rng = np.random.default_rng(RANDOM_SEED)

%config InlineBackend.figure_format = 'retina'
az.style.use("arviz-darkgrid")

size = 200
true_intercept = 1
true_slope = 2

x = np.linspace(0, 1, size)
# y = a + b*x
true_regression_line = true_intercept + true_slope * x
# add noise
y = true_regression_line + rng.normal(scale=0.5, size=size)

data = pd.DataFrame(dict(x=x, y=y))

with Model() as model:  # model specifications in PyMC are wrapped in a with-statement
    # Define priors
    sigma = HalfCauchy("sigma", beta=10)
    intercept = Normal("Intercept", 0, sigma=20)
    slope = Normal("slope", 0, sigma=20)

    # Define likelihood
    likelihood = Normal("y", mu=intercept + slope * x, sigma=sigma, observed=y)

    # Inference!
    # draw 3000 posterior samples using NUTS sampling
    idata = sample(3000)

Gives this error:

ERROR (pytensor.graph.rewriting.basic): Rewrite failure due to: constant_folding
ERROR (pytensor.graph.rewriting.basic): node: Cast{float64}(10)
ERROR (pytensor.graph.rewriting.basic): TRACEBACK:
ERROR (pytensor.graph.rewriting.basic): Traceback (most recent call last):
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1909, in process_node
    replacements = node_rewriter.transform(fgraph, node)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1081, in transform
    return self.fn(fgraph, node)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/tensor/rewriting/basic.py", line 1121, in constant_folding
    thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1627, in cthunk_factory
    module = cache.module_from_key(key=key, lnk=self)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 1255, in module_from_key
    module = lnk.compile_cmodule(location)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1528, in compile_cmodule
    module = c_compiler.compile_str(
             ^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 2654, in compile_str
    raise CompileError(
pytensor.link.c.exceptions.CompileError: Compilation failed (return status=1):
/Users/jan/anaconda3/bin/clang++ -dynamiclib -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -Wno-c++11-narrowing -fno-exceptions -fno-unwind-tables -fno-asynchronous-unwind-tables -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -undefined dynamic_lookup -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/numpy/core/include -I/Users/jan/anaconda3/envs/pymc_env/include/python3.12 -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/c_code -L/Users/jan/anaconda3/envs/pymc_env/lib -fvisibility=hidden -o /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpdsdu5j49/m651af1bdd3afccbb48636c26705d77db2e18c6653f6b84247a30f2f0cd8608f3.so /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpdsdu5j49/mod.cpp
In file included from /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpdsdu5j49/mod.cpp:1:
In file included from /Users/jan/anaconda3/envs/pymc_env/include/python3.12/Python.h:23:
/Users/jan/anaconda3/bin/../include/c++/v1/stdlib.h:93:15: fatal error: 'stdlib.h' file not found
#include_next <stdlib.h>
              ^~~~~~~~~~
1 error generated.

You can find the C code in this temporary file: /var/folders/bx/tb4883l53hdd3zp2y0nyy_4m0000gp/T/pytensor_compilation_error_iefw3hem

ERROR (pytensor.graph.rewriting.basic): Rewrite failure due to: constant_folding
ERROR (pytensor.graph.rewriting.basic): node: Cast{float64}(0)
ERROR (pytensor.graph.rewriting.basic): TRACEBACK:
ERROR (pytensor.graph.rewriting.basic): Traceback (most recent call last):
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1909, in process_node
    replacements = node_rewriter.transform(fgraph, node)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1081, in transform
    return self.fn(fgraph, node)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/tensor/rewriting/basic.py", line 1121, in constant_folding
    thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1627, in cthunk_factory
    module = cache.module_from_key(key=key, lnk=self)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 1255, in module_from_key
    module = lnk.compile_cmodule(location)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1528, in compile_cmodule
    module = c_compiler.compile_str(
             ^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 2654, in compile_str
    raise CompileError(
pytensor.link.c.exceptions.CompileError: Compilation failed (return status=1):
/Users/jan/anaconda3/bin/clang++ -dynamiclib -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -Wno-c++11-narrowing -fno-exceptions -fno-unwind-tables -fno-asynchronous-unwind-tables -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -undefined dynamic_lookup -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/numpy/core/include -I/Users/jan/anaconda3/envs/pymc_env/include/python3.12 -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/c_code -L/Users/jan/anaconda3/envs/pymc_env/lib -fvisibility=hidden -o /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpkfgwjnmk/m651af1bdd3afccbb48636c26705d77db2e18c6653f6b84247a30f2f0cd8608f3.so /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpkfgwjnmk/mod.cpp
In file included from /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpkfgwjnmk/mod.cpp:1:
In file included from /Users/jan/anaconda3/envs/pymc_env/include/python3.12/Python.h:23:
/Users/jan/anaconda3/bin/../include/c++/v1/stdlib.h:93:15: fatal error: 'stdlib.h' file not found
#include_next <stdlib.h>
              ^~~~~~~~~~
1 error generated.

You can find the C code in this temporary file: /var/folders/bx/tb4883l53hdd3zp2y0nyy_4m0000gp/T/pytensor_compilation_error_z_86lg10

ERROR (pytensor.graph.rewriting.basic): Rewrite failure due to: constant_folding
ERROR (pytensor.graph.rewriting.basic): node: Cast{float64}(10)
ERROR (pytensor.graph.rewriting.basic): TRACEBACK:
ERROR (pytensor.graph.rewriting.basic): Traceback (most recent call last):
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1909, in process_node
    replacements = node_rewriter.transform(fgraph, node)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1081, in transform
    return self.fn(fgraph, node)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/tensor/rewriting/basic.py", line 1121, in constant_folding
    thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1627, in cthunk_factory
    module = cache.module_from_key(key=key, lnk=self)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 1255, in module_from_key
    module = lnk.compile_cmodule(location)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1528, in compile_cmodule
    module = c_compiler.compile_str(
             ^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 2654, in compile_str
    raise CompileError(
pytensor.link.c.exceptions.CompileError: Compilation failed (return status=1):
/Users/jan/anaconda3/bin/clang++ -dynamiclib -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -Wno-c++11-narrowing -fno-exceptions -fno-unwind-tables -fno-asynchronous-unwind-tables -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -undefined dynamic_lookup -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/numpy/core/include -I/Users/jan/anaconda3/envs/pymc_env/include/python3.12 -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/c_code -L/Users/jan/anaconda3/envs/pymc_env/lib -fvisibility=hidden -o /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpv3k10c6q/m651af1bdd3afccbb48636c26705d77db2e18c6653f6b84247a30f2f0cd8608f3.so /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpv3k10c6q/mod.cpp
In file included from /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpv3k10c6q/mod.cpp:1:
In file included from /Users/jan/anaconda3/envs/pymc_env/include/python3.12/Python.h:23:
/Users/jan/anaconda3/bin/../include/c++/v1/stdlib.h:93:15: fatal error: 'stdlib.h' file not found
#include_next <stdlib.h>
              ^~~~~~~~~~
1 error generated.

You can find the C code in this temporary file: /var/folders/bx/tb4883l53hdd3zp2y0nyy_4m0000gp/T/pytensor_compilation_error_m87jvrx8

ERROR (pytensor.graph.rewriting.basic): Rewrite failure due to: constant_folding
ERROR (pytensor.graph.rewriting.basic): node: Cast{float64}(0)
ERROR (pytensor.graph.rewriting.basic): TRACEBACK:
ERROR (pytensor.graph.rewriting.basic): Traceback (most recent call last):
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1909, in process_node
    replacements = node_rewriter.transform(fgraph, node)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1081, in transform
    return self.fn(fgraph, node)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/tensor/rewriting/basic.py", line 1121, in constant_folding
    thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1627, in cthunk_factory
    module = cache.module_from_key(key=key, lnk=self)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 1255, in module_from_key
    module = lnk.compile_cmodule(location)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1528, in compile_cmodule
    module = c_compiler.compile_str(
             ^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 2654, in compile_str
    raise CompileError(
pytensor.link.c.exceptions.CompileError: Compilation failed (return status=1):
/Users/jan/anaconda3/bin/clang++ -dynamiclib -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -Wno-c++11-narrowing -fno-exceptions -fno-unwind-tables -fno-asynchronous-unwind-tables -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -undefined dynamic_lookup -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/numpy/core/include -I/Users/jan/anaconda3/envs/pymc_env/include/python3.12 -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/c_code -L/Users/jan/anaconda3/envs/pymc_env/lib -fvisibility=hidden -o /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpcw37nzjz/m651af1bdd3afccbb48636c26705d77db2e18c6653f6b84247a30f2f0cd8608f3.so /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpcw37nzjz/mod.cpp
In file included from /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpcw37nzjz/mod.cpp:1:
In file included from /Users/jan/anaconda3/envs/pymc_env/include/python3.12/Python.h:23:
/Users/jan/anaconda3/bin/../include/c++/v1/stdlib.h:93:15: fatal error: 'stdlib.h' file not found
#include_next <stdlib.h>
              ^~~~~~~~~~
1 error generated.

You can find the C code in this temporary file: /var/folders/bx/tb4883l53hdd3zp2y0nyy_4m0000gp/T/pytensor_compilation_error_0yu5f_3n

ERROR (pytensor.graph.rewriting.basic): Rewrite failure due to: constant_folding
ERROR (pytensor.graph.rewriting.basic): node: Cast{float64}(10)
ERROR (pytensor.graph.rewriting.basic): TRACEBACK:
ERROR (pytensor.graph.rewriting.basic): Traceback (most recent call last):
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1909, in process_node
    replacements = node_rewriter.transform(fgraph, node)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1081, in transform
    return self.fn(fgraph, node)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/tensor/rewriting/basic.py", line 1121, in constant_folding
    thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1627, in cthunk_factory
    module = cache.module_from_key(key=key, lnk=self)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 1255, in module_from_key
    module = lnk.compile_cmodule(location)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1528, in compile_cmodule
    module = c_compiler.compile_str(
             ^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 2654, in compile_str
    raise CompileError(
pytensor.link.c.exceptions.CompileError: Compilation failed (return status=1):
/Users/jan/anaconda3/bin/clang++ -dynamiclib -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -Wno-c++11-narrowing -fno-exceptions -fno-unwind-tables -fno-asynchronous-unwind-tables -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -undefined dynamic_lookup -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/numpy/core/include -I/Users/jan/anaconda3/envs/pymc_env/include/python3.12 -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/c_code -L/Users/jan/anaconda3/envs/pymc_env/lib -fvisibility=hidden -o /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpitg4sqk0/m651af1bdd3afccbb48636c26705d77db2e18c6653f6b84247a30f2f0cd8608f3.so /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpitg4sqk0/mod.cpp
In file included from /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpitg4sqk0/mod.cpp:1:
In file included from /Users/jan/anaconda3/envs/pymc_env/include/python3.12/Python.h:23:
/Users/jan/anaconda3/bin/../include/c++/v1/stdlib.h:93:15: fatal error: 'stdlib.h' file not found
#include_next <stdlib.h>
              ^~~~~~~~~~
1 error generated.

You can find the C code in this temporary file: /var/folders/bx/tb4883l53hdd3zp2y0nyy_4m0000gp/T/pytensor_compilation_error_mwq9lyh_

ERROR (pytensor.graph.rewriting.basic): Rewrite failure due to: constant_folding
ERROR (pytensor.graph.rewriting.basic): node: Cast{float64}(0)
ERROR (pytensor.graph.rewriting.basic): TRACEBACK:
ERROR (pytensor.graph.rewriting.basic): Traceback (most recent call last):
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1909, in process_node
    replacements = node_rewriter.transform(fgraph, node)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/graph/rewriting/basic.py", line 1081, in transform
    return self.fn(fgraph, node)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/tensor/rewriting/basic.py", line 1121, in constant_folding
    thunk = node.op.make_thunk(node, storage_map, compute_map, no_recycling=[])
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 119, in make_thunk
    return self.make_c_thunk(node, storage_map, compute_map, no_recycling)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/op.py", line 84, in make_c_thunk
    outputs = cl.make_thunk(
              ^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1182, in make_thunk
    cthunk, module, in_storage, out_storage, error_storage = self.__compile__(
                                                             ^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1103, in __compile__
    thunk, module = self.cthunk_factory(
                    ^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1627, in cthunk_factory
    module = cache.module_from_key(key=key, lnk=self)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 1255, in module_from_key
    module = lnk.compile_cmodule(location)
             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/basic.py", line 1528, in compile_cmodule
    module = c_compiler.compile_str(
             ^^^^^^^^^^^^^^^^^^^^^^^
  File "/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py", line 2654, in compile_str
    raise CompileError(
pytensor.link.c.exceptions.CompileError: Compilation failed (return status=1):
/Users/jan/anaconda3/bin/clang++ -dynamiclib -g -O3 -fno-math-errno -Wno-unused-label -Wno-unused-variable -Wno-write-strings -Wno-c++11-narrowing -fno-exceptions -fno-unwind-tables -fno-asynchronous-unwind-tables -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -undefined dynamic_lookup -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/numpy/core/include -I/Users/jan/anaconda3/envs/pymc_env/include/python3.12 -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/c_code -L/Users/jan/anaconda3/envs/pymc_env/lib -fvisibility=hidden -o /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpbflxscsj/m651af1bdd3afccbb48636c26705d77db2e18c6653f6b84247a30f2f0cd8608f3.so /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpbflxscsj/mod.cpp
In file included from /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/tmpbflxscsj/mod.cpp:1:
In file included from /Users/jan/anaconda3/envs/pymc_env/include/python3.12/Python.h:23:
/Users/jan/anaconda3/bin/../include/c++/v1/stdlib.h:93:15: fatal error: 'stdlib.h' file not found
#include_next <stdlib.h>
              ^~~~~~~~~~
1 error generated.

You can find the C code in this temporary file: /var/folders/bx/tb4883l53hdd3zp2y0nyy_4m0000gp/T/pytensor_compilation_error_cl5df4a0

You can find the C code in this temporary file: /var/folders/bx/tb4883l53hdd3zp2y0nyy_4m0000gp/T/pytensor_compilation_error_0ds75v0l

---------------------------------------------------------------------------
ImportError                               Traceback (most recent call last)
File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/lazylinker_c.py:66
     65         if version != actual_version:
---> 66             raise ImportError(
     67                 "Version check of the existing lazylinker compiled file."
     68                 f" Looking for version {version}, but found {actual_version}. "
     69                 f"Extra debug information: force_compile={force_compile}, _need_reload={_need_reload}"
     70             )
     71 except ImportError:

ImportError: Version check of the existing lazylinker compiled file. Looking for version 0.212, but found None. Extra debug information: force_compile=False, _need_reload=True

During handling of the above exception, another exception occurred:

ImportError                               Traceback (most recent call last)
File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/lazylinker_c.py:87
     86     if version != actual_version:
---> 87         raise ImportError(
     88             "Version check of the existing lazylinker compiled file."
     89             f" Looking for version {version}, but found {actual_version}. "
     90             f"Extra debug information: force_compile={force_compile}, _need_reload={_need_reload}"
     91         )
     92 except ImportError:
     93     # It is useless to try to compile if there isn't any
     94     # compiler!  But we still want to try to load it, in case
     95     # the cache was copied from another computer.

ImportError: Version check of the existing lazylinker compiled file. Looking for version 0.212, but found None. Extra debug information: force_compile=False, _need_reload=True

During handling of the above exception, another exception occurred:

CompileError                              Traceback (most recent call last)
Cell In[21], line 47
     43 likelihood = Normal("y", mu=intercept + slope * x, sigma=sigma, observed=y)
     45 # Inference!
     46 # draw 3000 posterior samples using NUTS sampling
---> 47 idata = sample(3000)

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/sampling/mcmc.py:716, in sample(draws, tune, chains, cores, random_seed, progressbar, progressbar_theme, step, var_names, nuts_sampler, initvals, init, jitter_max_retries, n_init, trace, discard_tuned_samples, compute_convergence_checks, keep_warning_stat, return_inferencedata, idata_kwargs, nuts_sampler_kwargs, callback, mp_ctx, blas_cores, model, **kwargs)
    713         auto_nuts_init = False
    715 initial_points = None
--> 716 step = assign_step_methods(model, step, methods=pm.STEP_METHODS, step_kwargs=kwargs)
    718 if nuts_sampler != "pymc":
    719     if not isinstance(step, NUTS):

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/sampling/mcmc.py:237, in assign_step_methods(model, step, methods, step_kwargs)
    229         selected = max(
    230             methods_list,
    231             key=lambda method, var=rv_var, has_gradient=has_gradient: method._competence(  # type: ignore
    232                 var, has_gradient
    233             ),
    234         )
    235         selected_steps.setdefault(selected, []).append(var)
--> 237 return instantiate_steppers(model, steps, selected_steps, step_kwargs)

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/sampling/mcmc.py:138, in instantiate_steppers(model, steps, selected_steps, step_kwargs)
    136         args = step_kwargs.get(name, {})
    137         used_keys.add(name)
--> 138         step = step_class(vars=vars, model=model, **args)
    139         steps.append(step)
    141 unused_args = set(step_kwargs).difference(used_keys)

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/step_methods/hmc/nuts.py:180, in NUTS.__init__(self, vars, max_treedepth, early_max_treedepth, **kwargs)
    122 def __init__(self, vars=None, max_treedepth=10, early_max_treedepth=8, **kwargs):
    123     r"""Set up the No-U-Turn sampler.
    124 
    125     Parameters
   (...)
    178     `pm.sample` to the desired number of tuning steps.
    179     """
--> 180     super().__init__(vars, **kwargs)
    182     self.max_treedepth = max_treedepth
    183     self.early_max_treedepth = early_max_treedepth

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/step_methods/hmc/base_hmc.py:109, in BaseHMC.__init__(self, vars, scaling, step_scale, is_cov, model, blocked, potential, dtype, Emax, target_accept, gamma, k, t0, adapt_step_size, step_rand, **pytensor_kwargs)
    107 else:
    108     vars = get_value_vars_from_user_vars(vars, self._model)
--> 109 super().__init__(vars, blocked=blocked, model=self._model, dtype=dtype, **pytensor_kwargs)
    111 self.adapt_step_size = adapt_step_size
    112 self.Emax = Emax

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/step_methods/arraystep.py:163, in GradientSharedStep.__init__(self, vars, model, blocked, dtype, logp_dlogp_func, **pytensor_kwargs)
    160 model = modelcontext(model)
    162 if logp_dlogp_func is None:
--> 163     func = model.logp_dlogp_function(vars, dtype=dtype, **pytensor_kwargs)
    164 else:
    165     func = logp_dlogp_func

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/model/core.py:620, in Model.logp_dlogp_function(self, grad_vars, tempered, **kwargs)
    617     costs = [self.logp()]
    619 input_vars = {i for i in graph_inputs(costs) if not isinstance(i, Constant)}
--> 620 ip = self.initial_point(0)
    621 extra_vars_and_values = {
    622     var: ip[var.name]
    623     for var in self.value_vars
    624     if var in input_vars and var not in grad_vars
    625 }
    626 return ValueGradFunction(costs, grad_vars, extra_vars_and_values, **kwargs)

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/model/core.py:1094, in Model.initial_point(self, random_seed)
   1081 def initial_point(self, random_seed: SeedSequenceSeed = None) -> dict[str, np.ndarray]:
   1082     """Computes the initial point of the model.
   1083 
   1084     Parameters
   (...)
   1092         Maps names of transformed variables to numeric initial values in the transformed space.
   1093     """
-> 1094     fn = make_initial_point_fn(model=self, return_transformed=True)
   1095     return Point(fn(random_seed), model=self)

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/initial_point.py:152, in make_initial_point_fn(model, overrides, jitter_rvs, default_strategy, return_transformed)
    149 # Replace original rng shared variables so that we don't mess with them
    150 # when calling the final seeded function
    151 initial_values = replace_rng_nodes(initial_values)
--> 152 func = compile_pymc(inputs=[], outputs=initial_values, mode=pytensor.compile.mode.FAST_COMPILE)
    154 varnames = []
    155 for var in model.free_RVs:

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pymc/pytensorf.py:1039, in compile_pymc(inputs, outputs, random_seed, mode, **kwargs)
   1037 opt_qry = mode.provided_optimizer.including("random_make_inplace", check_parameter_opt)
   1038 mode = Mode(linker=mode.linker, optimizer=opt_qry)
-> 1039 pytensor_function = pytensor.function(
   1040     inputs,
   1041     outputs,
   1042     updates={**rng_updates, **kwargs.pop("updates", {})},
   1043     mode=mode,
   1044     **kwargs,
   1045 )
   1046 return pytensor_function

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/compile/function/__init__.py:318, in function(inputs, outputs, mode, updates, givens, no_default_updates, accept_inplace, name, rebuild_strict, allow_input_downcast, profile, on_unused_input)
    312     fn = orig_function(
    313         inputs, outputs, mode=mode, accept_inplace=accept_inplace, name=name
    314     )
    315 else:
    316     # note: pfunc will also call orig_function -- orig_function is
    317     #      a choke point that all compilation must pass through
--> 318     fn = pfunc(
    319         params=inputs,
    320         outputs=outputs,
    321         mode=mode,
    322         updates=updates,
    323         givens=givens,
    324         no_default_updates=no_default_updates,
    325         accept_inplace=accept_inplace,
    326         name=name,
    327         rebuild_strict=rebuild_strict,
    328         allow_input_downcast=allow_input_downcast,
    329         on_unused_input=on_unused_input,
    330         profile=profile,
    331         output_keys=output_keys,
    332     )
    333 return fn

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/compile/function/pfunc.py:465, in pfunc(params, outputs, mode, updates, givens, no_default_updates, accept_inplace, name, rebuild_strict, allow_input_downcast, profile, on_unused_input, output_keys, fgraph)
    451     profile = ProfileStats(message=profile)
    453 inputs, cloned_outputs = construct_pfunc_ins_and_outs(
    454     params,
    455     outputs,
   (...)
    462     fgraph=fgraph,
    463 )
--> 465 return orig_function(
    466     inputs,
    467     cloned_outputs,
    468     mode,
    469     accept_inplace=accept_inplace,
    470     name=name,
    471     profile=profile,
    472     on_unused_input=on_unused_input,
    473     output_keys=output_keys,
    474     fgraph=fgraph,
    475 )

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/compile/function/types.py:1762, in orig_function(inputs, outputs, mode, accept_inplace, name, profile, on_unused_input, output_keys, fgraph)
   1750     m = Maker(
   1751         inputs,
   1752         outputs,
   (...)
   1759         fgraph=fgraph,
   1760     )
   1761     with config.change_flags(compute_test_value="off"):
-> 1762         fn = m.create(defaults)
   1763 finally:
   1764     if profile and fn:

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/compile/function/types.py:1654, in FunctionMaker.create(self, input_storage, storage_map)
   1651 start_import_time = pytensor.link.c.cmodule.import_time
   1653 with config.change_flags(traceback__limit=config.traceback__compile_limit):
-> 1654     _fn, _i, _o = self.linker.make_thunk(
   1655         input_storage=input_storage_lists, storage_map=storage_map
   1656     )
   1658 end_linker = time.perf_counter()
   1660 linker_time = end_linker - start_linker

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/basic.py:245, in LocalLinker.make_thunk(self, input_storage, output_storage, storage_map, **kwargs)
    238 def make_thunk(
    239     self,
    240     input_storage: Optional["InputStorageType"] = None,
   (...)
    243     **kwargs,
    244 ) -> tuple["BasicThunkType", "InputStorageType", "OutputStorageType"]:
--> 245     return self.make_all(
    246         input_storage=input_storage,
    247         output_storage=output_storage,
    248         storage_map=storage_map,
    249     )[:3]

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/vm.py:1282, in VMLinker.make_all(self, profiler, input_storage, output_storage, storage_map)
   1279 else:
   1280     post_thunk_clear = None
-> 1282 vm = self.make_vm(
   1283     order,
   1284     thunks,
   1285     input_storage,
   1286     output_storage,
   1287     storage_map,
   1288     post_thunk_clear,
   1289     computed,
   1290     compute_map,
   1291     self.updated_vars,
   1292 )
   1294 vm.storage_map = storage_map
   1295 vm.compute_map = compute_map

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/vm.py:1010, in VMLinker.make_vm(self, nodes, thunks, input_storage, output_storage, storage_map, post_thunk_clear, computed, compute_map, updated_vars)
   1007 pre_call_clear = [storage_map[v] for v in self.no_recycling]
   1009 try:
-> 1010     from pytensor.link.c.cvm import CVM
   1011 except (MissingGXX, ImportError):
   1012     CVM = None

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cvm.py:13
      9 if not config.cxx:
     10     raise MissingGXX(
     11         "lazylinker will not be imported if pytensor.config.cxx is not set."
     12     )
---> 13 from pytensor.link.c.lazylinker_c import CLazyLinker
     15 class CVM(CLazyLinker, VM):
     16     def __init__(self, fgraph, *args, **kwargs):

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/lazylinker_c.py:122
    119 loc.mkdir(exist_ok=True)
    121 args = GCC_compiler.compile_args()
--> 122 GCC_compiler.compile_str(dirname, code, location=loc, preargs=args)
    123 # Save version into the __init__.py file.
    124 init_py = loc / "__init__.py"

File ~/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/cmodule.py:2654, in GCC_compiler.compile_str(module_name, src_code, location, include_dirs, lib_dirs, libs, preargs, py_module, hide_symbols)
   2646                 print(
   2647                     "Check if package python-dev or python-devel is installed."
   2648                 )
   2650     # We replace '\n' by '. ' in the error message because when Python
   2651     # prints the exception, having '\n' in the text makes it more
   2652     # difficult to read.
   2653     # compile_stderr = compile_stderr.replace("\n", ". ")
-> 2654     raise CompileError(
   2655         f"Compilation failed (return status={status}):\n{' '.join(cmd)}\n{compile_stderr}"
   2656     )
   2657 elif config.cmodule__compilation_warning and compile_stderr:
   2658     # Print errors just below the command line.
   2659     print(compile_stderr)

CompileError: Compilation failed (return status=1):
/Users/jan/anaconda3/bin/clang++ -dynamiclib -g -Wno-c++11-narrowing -fno-exceptions -fno-unwind-tables -fno-asynchronous-unwind-tables -DNPY_NO_DEPRECATED_API=NPY_1_7_API_VERSION -m64 -fPIC -undefined dynamic_lookup -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/numpy/core/include -I/Users/jan/anaconda3/envs/pymc_env/include/python3.12 -I/Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/c_code -L/Users/jan/anaconda3/envs/pymc_env/lib -fvisibility=hidden -o /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/lazylinker_ext/lazylinker_ext.so /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/lazylinker_ext/mod.cpp
In file included from /Users/jan/.pytensor/compiledir_macOS-14.5-x86_64-i386-64bit-i386-3.12.4-64/lazylinker_ext/mod.cpp:1:
In file included from /Users/jan/anaconda3/envs/pymc_env/lib/python3.12/site-packages/pytensor/link/c/c_code/pytensor_mod_helper.h:4:
In file included from /Users/jan/anaconda3/envs/pymc_env/include/python3.12/Python.h:23:
/Users/jan/anaconda3/bin/../include/c++/v1/stdlib.h:93:15: fatal error: 'stdlib.h' file not found
#include_next <stdlib.h>
              ^~~~~~~~~~
1 error generated.