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pymzml / pymzML

pymzML - an interface between Python and mzML Mass spectrometry Files
https://pymzml.readthedocs.io/en/latest/
MIT License
160 stars 91 forks source link

Update precommit hook pre-commit/pre-commit-hooks to v3 #257

Closed renovate[bot] closed 3 years ago

renovate[bot] commented 3 years ago

WhiteSource Renovate

This PR contains the following updates:

Package Type Update Change
pre-commit/pre-commit-hooks repository major v2.5.0 -> v3.3.0

Release Notes

pre-commit/pre-commit-hooks ### [`v3.3.0`](https://togithub.com/pre-commit/pre-commit-hooks/releases/v3.3.0) [Compare Source](https://togithub.com/pre-commit/pre-commit-hooks/compare/v3.2.0...v3.3.0) ##### Features - `file-contents-sorter`: add `--ignore-case` option for case-insensitive sorting - [#​514](https://togithub.com/pre-commit/pre-commit-hooks/issues/514) PR by [@​Julian](https://togithub.com/Julian). - `check-added-large-files`: add `--enforce-all` option to check non-added files as well - [#​519](https://togithub.com/pre-commit/pre-commit-hooks/issues/519) PR by [@​mshawcroft](https://togithub.com/mshawcroft). - [#​518](https://togithub.com/pre-commit/pre-commit-hooks/issues/518) issue by [@​mshawcroft](https://togithub.com/mshawcroft). - `fix-byte-order-marker`: new hook which fixes UTF-8 byte-order marker. - [#​522](https://togithub.com/pre-commit/pre-commit-hooks/issues/522) PR by [@​jgowdy](https://togithub.com/jgowdy). ##### Deprecations - `check-byte-order-marker` is now deprecated for `fix-byte-order-marker` ### [`v3.2.0`](https://togithub.com/pre-commit/pre-commit-hooks/releases/v3.2.0) [Compare Source](https://togithub.com/pre-commit/pre-commit-hooks/compare/v3.1.0...v3.2.0) ##### Features - `debug-statements`: add support for `pydevd_pycharm` debugger - [#​502](https://togithub.com/pre-commit/pre-commit-hooks/issues/502) PR by [@​jgeerds](https://togithub.com/jgeerds). ##### Fixes - `check-executables-have-shebangs`: fix git-quoted files on windows (spaces, non-ascii, etc.) - [#​509](https://togithub.com/pre-commit/pre-commit-hooks/issues/509) PR by [@​pawamoy](https://togithub.com/pawamoy). - [#​508](https://togithub.com/pre-commit/pre-commit-hooks/issues/508) issue by [@​pawamoy](https://togithub.com/pawamoy). ### [`v3.1.0`](https://togithub.com/pre-commit/pre-commit-hooks/releases/v3.1.0) [Compare Source](https://togithub.com/pre-commit/pre-commit-hooks/compare/v3.0.1...v3.1.0) ##### Features - `check-executables-have-shebangs`: on windows, validate the mode bits using `git` - [#​480](https://togithub.com/pre-commit/pre-commit-hooks/issues/480) PR by [@​mxr](https://togithub.com/mxr). - [#​435](https://togithub.com/pre-commit/pre-commit-hooks/issues/435) issue by [@​dstandish](https://togithub.com/dstandish). - `requirements-txt-fixer`: support more operators - [#​483](https://togithub.com/pre-commit/pre-commit-hooks/issues/483) PR by [@​mxr](https://togithub.com/mxr). - [#​331](https://togithub.com/pre-commit/pre-commit-hooks/issues/331) issue by [@​hackedd](https://togithub.com/hackedd). ##### Fixes - `pre-commit-hooks-removed`: Fix when removed hooks used `args` - [#​487](https://togithub.com/pre-commit/pre-commit-hooks/issues/487) PR by [@​pedrocalleja](https://togithub.com/pedrocalleja). - [#​485](https://togithub.com/pre-commit/pre-commit-hooks/issues/485) issue by [@​pedrocalleja](https://togithub.com/pedrocalleja). ### [`v3.0.1`](https://togithub.com/pre-commit/pre-commit-hooks/releases/v3.0.1) [Compare Source](https://togithub.com/pre-commit/pre-commit-hooks/compare/v3.0.0...v3.0.1) ##### Fixes - `check-toml`: use UTF-8 encoding to load toml files - [#​479](https://togithub.com/pre-commit/pre-commit-hooks/issues/479) PR by [@​mxr](https://togithub.com/mxr). - [#​474](https://togithub.com/pre-commit/pre-commit-hooks/issues/474) issue by [@​staticdev](https://togithub.com/staticdev). ### [`v3.0.0`](https://togithub.com/pre-commit/pre-commit-hooks/releases/v3.0.0) [Compare Source](https://togithub.com/pre-commit/pre-commit-hooks/compare/v2.5.0...v3.0.0) ##### Features - `detect-aws-credentials`: skip empty aws keys - [#​450](https://togithub.com/pre-commit/pre-commit-hooks/issues/450) PR by [@​begoon](https://togithub.com/begoon). - [#​449](https://togithub.com/pre-commit/pre-commit-hooks/issues/449) issue by [@​begoon](https://togithub.com/begoon). - `debug-statements`: add detection `wdb` debugger - [#​452](https://togithub.com/pre-commit/pre-commit-hooks/issues/452) PR by [@​itsdkey](https://togithub.com/itsdkey). - [#​451](https://togithub.com/pre-commit/pre-commit-hooks/issues/451) issue by [@​itsdkey](https://togithub.com/itsdkey). - `requirements-txt-fixer`: support line continuation for dependencies - [#​469](https://togithub.com/pre-commit/pre-commit-hooks/issues/469) PR by [@​aniketbhatnagar](https://togithub.com/aniketbhatnagar). - [#​465](https://togithub.com/pre-commit/pre-commit-hooks/issues/465) issue by [@​aniketbhatnagar](https://togithub.com/aniketbhatnagar). ##### Fixes - `detect-aws-credentials`: fix `UnicodeDecodeError` when running on non-UTF8 files. - [#​453](https://togithub.com/pre-commit/pre-commit-hooks/issues/453) PR by [@​asottile](https://togithub.com/asottile). - [#​393](https://togithub.com/pre-commit/pre-commit-hooks/issues/393) PR by [@​a7p](https://togithub.com/a7p) - [#​346](https://togithub.com/pre-commit/pre-commit-hooks/issues/346) issue by [@​rpdelaney](https://togithub.com/rpdelaney). ##### Updating - pre-commit/pre-commit-hooks now requires python3.6.1+ - [#​447](https://togithub.com/pre-commit/pre-commit-hooks/issues/447) PR by [@​asottile](https://togithub.com/asottile). - [#​455](https://togithub.com/pre-commit/pre-commit-hooks/issues/455) PR by [@​asottile](https://togithub.com/asottile). - `flake8` / `pyflakes` have been removed, use `flake8` from `pycqa/flake8` instead: ```yaml - repo: https://gitlab.com/pycqa/flake8 rev: 3.8.1 hooks: - id: flake8 ``` - [#​476](https://togithub.com/pre-commit/pre-commit-hooks/issues/476) PR by [@​asottile](https://togithub.com/asottile). - [#​477](https://togithub.com/pre-commit/pre-commit-hooks/issues/477) PR by [@​asottile](https://togithub.com/asottile). - [#​344](https://togithub.com/pre-commit/pre-commit-hooks/issues/344) issue by [@​asottile](https://togithub.com/asottile).

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codecov[bot] commented 3 years ago

Codecov Report

Merging #257 (17de39d) into dev (ab31ba8) will not change coverage. The diff coverage is n/a.

Impacted file tree graph

@@           Coverage Diff           @@
##              dev     #257   +/-   ##
=======================================
  Coverage   84.30%   84.30%           
=======================================
  Files          32       32           
  Lines        3727     3727           
=======================================
  Hits         3142     3142           
  Misses        585      585

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