pymzml / pymzML

pymzML - an interface between Python and mzML Mass spectrometry Files
https://pymzml.readthedocs.io/en/latest/
MIT License
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Update dependency sphinx to v6.2.1 #330

Closed renovate[bot] closed 10 months ago

renovate[bot] commented 1 year ago

Mend Renovate

This PR contains the following updates:

Package Change Age Adoption Passing Confidence
sphinx (changelog) ==6.1.3 -> ==6.2.1 age adoption passing confidence

Release Notes

sphinx-doc/sphinx (sphinx) ### [`v6.2.1`](https://togithub.com/sphinx-doc/sphinx/blob/HEAD/CHANGES#Release-621-released-Apr-25-2023) [Compare Source](https://togithub.com/sphinx-doc/sphinx/compare/v6.2.0...v6.2.1) \===================================== ## Bugs fixed - [#​11355](https://togithub.com/sphinx-doc/sphinx/issues/11355): Revert the default type of :confval:`nitpick_ignore` and :confval:`nitpick_ignore_regex` to `list`. ### [`v6.2.0`](https://togithub.com/sphinx-doc/sphinx/blob/HEAD/CHANGES#Release-620-released-Apr-23-2023) [Compare Source](https://togithub.com/sphinx-doc/sphinx/compare/v6.1.3...v6.2.0) \===================================== ## Dependencies - Require Docutils 0.18.1 or greater. ## Incompatible changes - LaTeX: removal of some internal TeX `\dimen` registers (not previously publicly documented) as per 5.1.0 code comments in `sphinx.sty`: `\sphinxverbatimsep`, `\sphinxverbatimborder`, `\sphinxshadowsep`, `\sphinxshadowsize`, and `\sphinxshadowrule`. (refs: [#​11105](https://togithub.com/sphinx-doc/sphinx/issues/11105)) - Remove `.egg` support from pycode `ModuleAnalyser`; Python eggs are a now-obsolete binary distribution format - [#​11089](https://togithub.com/sphinx-doc/sphinx/issues/11089): Remove deprecated code in `sphinx.builders.linkcheck`. Patch by Daniel Eades - Remove internal-only `sphinx.locale.setlocale` ## Deprecated - [#​11247](https://togithub.com/sphinx-doc/sphinx/issues/11247): Deprecate the legacy `intersphinx_mapping` format - `sphinx.util.osutil.cd` is deprecated in favour of `contextlib.chdir`. ## Features added - [#​11277](https://togithub.com/sphinx-doc/sphinx/issues/11277): :rst:dir:`autoproperty` allows the return type to be specified as a type comment (e.g., `# type: () -> int`). Patch by Bénédikt Tran - [#​10811](https://togithub.com/sphinx-doc/sphinx/issues/10811): Autosummary: extend `__all__` to imported members for template rendering when option `autosummary_ignore_module_all` is set to `False`. Patch by Clement Pinard - [#​11147](https://togithub.com/sphinx-doc/sphinx/issues/11147): Add a `content_offset` parameter to `nested_parse_with_titles()`, allowing for correct line numbers during nested parsing. Patch by Jeremy Maitin-Shepard - Update to Unicode CLDR 42 - Add a `--jobs` synonym for `-j`. Patch by Hugo van Kemenade - LaTeX: a command `\sphinxbox` for styling text elements with a (possibly rounded) box, optional background color and shadow, has been added. See :ref:`sphinxbox`. (refs: [#​11224](https://togithub.com/sphinx-doc/sphinx/issues/11224)) - LaTeX: add `\sphinxstylenotetitle`, ..., `\sphinxstylewarningtitle`, ..., for an extra layer of mark-up freeing up `\sphinxstrong` for other uses. See :ref:`latex-macros`. (refs: [#​11267](https://togithub.com/sphinx-doc/sphinx/issues/11267)) - LaTeX: :dudir:`note`, :dudir:`hint`, :dudir:`important` and :dudir:`tip` can now each be styled as the other admonitions, i.e. possibly with a background color, individual border widths and paddings, possibly rounded corners, and optional shadow. See :ref:`additionalcss`. (refs: [#​11234](https://togithub.com/sphinx-doc/sphinx/issues/11234)) - LaTeX: admonitions and :dudir:`topic` (and :dudir:`contents `) directives, and not only :rst:dir:`code-block`, support `box-decoration-break=slice`. - LaTeX: let rounded boxes support up to 4 distinct border-widths (refs: [#​11243](https://togithub.com/sphinx-doc/sphinx/issues/11243)) - LaTeX: new options `noteTextColor`, `noteTeXextras` et al. See :ref:`additionalcss`. - LaTeX: support elliptical corners in rounded boxes. (refs: [#​11254](https://togithub.com/sphinx-doc/sphinx/issues/11254)) - [#​11150](https://togithub.com/sphinx-doc/sphinx/issues/11150): Include source location in highlighting warnings, when lexing fails. Patch by Jeremy Maitin-Shepard - [#​11281](https://togithub.com/sphinx-doc/sphinx/issues/11281): Support for :confval:`imgmath_latex` `= 'tectonic'` or `= 'xelatex'`. Patch by Dimitar Dimitrov - [#​11109](https://togithub.com/sphinx-doc/sphinx/issues/11109), [#​9643](https://togithub.com/sphinx-doc/sphinx/issues/9643): Add :confval:`python_display_short_literal_types` option for condensed rendering of `Literal` types. ## Bugs fixed - [#​11079](https://togithub.com/sphinx-doc/sphinx/issues/11079): LaTeX: figures with align attribute may disappear and strangely impact following lists - [#​11093](https://togithub.com/sphinx-doc/sphinx/issues/11093): LaTeX: fix "multiply-defined references" PDF build warnings when one or more reST labels directly precede an :rst:dir:`py:module` or :rst:dir:`automodule` directive. Patch by Bénédikt Tran (picnixz) - [#​11110](https://togithub.com/sphinx-doc/sphinx/issues/11110): LaTeX: Figures go missing from latex pdf if their files have the same base name and they use a post transform. Patch by aaron-cooper - LaTeX: fix potential color leak from shadow to border of rounded boxes, if shadow color is set but border color is not - LaTeX: fix unintended 1pt upwards vertical shift of code blocks frames respective to contents (when using rounded corners) - [#​11235](https://togithub.com/sphinx-doc/sphinx/issues/11235): LaTeX: added `\color` in topic (or admonition) contents may cause color leak to the shadow and border at a page break - [#​11264](https://togithub.com/sphinx-doc/sphinx/issues/11264): LaTeX: missing space before colon after "Voir aussi" for :rst:dir:`seealso` directive in French - [#​11268](https://togithub.com/sphinx-doc/sphinx/issues/11268): LaTeX: longtable with left alignment breaks out of current list indentation context in PDF. Thanks to picnixz. - [#​11274](https://togithub.com/sphinx-doc/sphinx/issues/11274): LaTeX: external links are not properly escaped for `\sphinxupquote` compatibility - [#​11147](https://togithub.com/sphinx-doc/sphinx/issues/11147): Fix source file/line number info in object description content and in other uses of `nested_parse_with_titles`. Patch by Jeremy Maitin-Shepard. - [#​11192](https://togithub.com/sphinx-doc/sphinx/issues/11192): Restore correct parallel search index building. Patch by Jeremy Maitin-Shepard - Use the new Transifex `tx` client ## Testing - Fail testing when any Python warnings are emitted - Migrate remaining `unittest.TestCase` style test functions to pytest style - Remove tests that rely on setuptools

Configuration

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