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PyNE: The Nuclear Engineering Toolkit
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Several tests are failing in the PyNE build with scikit-build. #1512

Open ahnaf-tahmid-chowdhury opened 6 months ago

ahnaf-tahmid-chowdhury commented 6 months ago

Description

The following tests are failing with the specified errors:

  1. test_mesh.py::test_structured_mesh_from_coords - ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimension. The detected shape was (3,) + inhomogeneous part.

  2. test_nucname.py::test_id - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte.

  3. test_rxname.py::test_name_not - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte.

  4. Other related UnicodeDecodeError issues in test_nucname.py and test_rxname.py.

Logs

============================= test session starts ==============================
platform linux -- Python 3.12.0, pytest-7.4.3, pluggy-1.3.0
rootdir: /home/runner/work/PyNE/PyNE
collected 1061 items / 3 skipped

test_ace.py ....                                                         [  0%]
test_activation_responses.py ....                                        [  0%]
test_alara.py .....................                                      [  2%]
test_binaryreader.py ...........................                         [  5%]
test_bins.py .............                                               [  6%]
test_cccc.py ..........                                                  [  7%]
test_cram.py ..............                                              [  8%]
test_data.py ........................................................... [ 14%]
...........                                                              [ 15%]
test_data_checksums.py ..                                                [ 15%]
test_data_nofile.py ...                                                  [ 15%]
test_decay.py .                                                          [ 15%]
test_endf.py .s..............................s.......                    [ 19%]
test_endl.py .....                                                       [ 20%]
test_enrichment.py ............................                          [ 22%]
test_ensdf.py ....                                                       [ 23%]
test_ensdf_processing.py ssssssssss                                      [ 24%]
test_fispact.py ......                                                   [ 24%]
test_fluka.py ....                                                       [ 25%]
test_fortran.py ...........                                              [ 26%]
test_jsoncpp.py ..............................                           [ 28%]
test_material.py ....................................................... [ 34%]
.....F...............................................                    [ 39%]
test_material_data_external.py .                                         [ 39%]
test_material_data_internal.py .                                         [ 39%]
test_materials_library.py .........                                      [ 40%]
test_mcnp.py ...............................                             [ 43%]
test_mesh.py ....F...................................................    [ 48%]
test_nucname.py ............F........................................... [ 53%]
............................................FFFFFFFFFFF................. [ 60%]
........................................................................ [ 67%]
.                                                                        [ 67%]
test_openmc_utils.py .......s.ss                                         [ 68%]
test_origen22.py .....................                                   [ 70%]
test_particle.py ........                                                [ 71%]
test_partisn.py .....................                                    [ 73%]
test_r2s.py ..F...F...ss                                                 [ 74%]
test_rxname.py ...................................F.....F.....F.......F. [ 79%]
....F..                                                                  [ 80%]
test_serpent.py ......                                                   [ 80%]
test_source.py ......                                                    [ 81%]
test_spectrometry.py .........                                           [ 82%]
test_stlcontainers.py ...............                                    [ 83%]
test_tally.py ........................................................   [ 88%]
test_transmuters.py .                                                    [ 88%]
test_tutorial_notebooks.py .                                             [ 89%]
test_utils.py ........................                                   [ 91%]
test_variancereduction.py .....                                          [ 91%]
transmute/test_chainsolve.py .......                                     [ 92%]
xs/test_cache.py ....                                                    [ 92%]
xs/test_channels.py .........F                                           [ 93%]
xs/test_data_source.py .............................                     [ 96%]
xs/test_models.py .....................................                  [100%]
=========================== short test summary info ============================
SKIPPED [1] test_ahot.py:6: No ahot_script available
SKIPPED [1] test_dagmc.py:32: Skipped
SKIPPED [1] test_source_sampling.py:22: Can't import mesh, skipping tests
SKIPPED [1] test_endf.py:28: http://www.nndc.bnl.gov/endf/b6.8/tapes/tape.100 not available
SKIPPED [1] test_endf.py:28: http://t2.lanl.gov/nis/data/data/ENDFB-VII.1-neutron/Ni/59 not available
SKIPPED [1] test_ensdf_processing.py:19: Skipped
SKIPPED [1] test_ensdf_processing.py:72: Skipped
SKIPPED [1] test_ensdf_processing.py:88: Skipped
SKIPPED [1] test_ensdf_processing.py:156: Skipped
SKIPPED [1] test_ensdf_processing.py:176: Skipped
SKIPPED [1] test_ensdf_processing.py:199: Skipped
SKIPPED [1] test_ensdf_processing.py:215: Skipped
SKIPPED [1] test_ensdf_processing.py:231: Skipped
SKIPPED [1] test_ensdf_processing.py:246: Skipped
SKIPPED [1] test_ensdf_processing.py:298: Skipped
SKIPPED [1] test_openmc_utils.py:165: Skipped
SKIPPED [1] test_openmc_utils.py:208: Skipped
SKIPPED [1] test_openmc_utils.py:269: Skipped
SKIPPED [1] test_r2s.py:699: Skipped
SKIPPED [1] test_r2s.py:733: Skipped
FAILED test_material.py::test_getitem_str - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xb8 in position 2: invalid start byte
FAILED test_mesh.py::test_structured_mesh_from_coords - ValueError: setting an array element with a sequence. The requested array has an inhomogeneous shape after 1 dimensions. The detected shape was (3,) + inhomogeneous part.
FAILED test_nucname.py::test_id - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[93000-930000000] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[95242-952420001] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[96244-962440000] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[95942-952420004] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[2004-20040000] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[94239-942390000] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[96644-962440001] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[95642-952420000] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[92000-920000000] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[92636-922360001] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_nucname.py::test_mcnp_to_id[2000-20000000] - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_r2s.py::test_irradiation_setup_unstructured - assert 0.0 == 1.74147e-06 ± 1.7e-12
  comparison failed
  Obtained: 0.0
  Expected: 1.74147e-06 ± 1.7e-12
FAILED test_r2s.py::test_irradiation_setup_unstructured_nondef_tag - assert -1.288229753919427e-231 == 0.0601522 ± 6.0e-08
  comparison failed
  Obtained: -1.288229753919427e-231
  Expected: 0.0601522 ± 6.0e-08
FAILED test_rxname.py::test_name_not - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_rxname.py::test_id_not - UnicodeDecodeError: 'utf-8' codec can't decode byte 0x9c in position 0: invalid start byte
FAILED test_rxname.py::test_mt_not - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED test_rxname.py::test_label_not - UnicodeDecodeError: 'utf-8' codec can't decode byte 0x9c in position 0: invalid start byte
FAILED test_rxname.py::test_doc_not - UnicodeDecodeError: 'utf-8' codec can't decode byte 0xcb in position 2: invalid continuation byte
FAILED xs/test_channels.py::test_sigma_t - AssertionError: 
Arrays are not almost equal to 6 decimals

Mismatched elements: 4 / 4 (100%)
Max absolute difference: 8.51769378
Max relative difference: 0.88425055
 x: array([1.114976, 1.272324, 1.558177, 2.375025])
 y: array([9.63267 , 7.290018, 5.075871, 3.442719])
===== 22 failed, 1022 passed, 20 skipped, 167 warnings in 98.60s (0:01:38) =====

Expected Behavior

The tests should pass without UnicodeDecodeError or ValueError.

Actual Behavior

Tests are failing with UnicodeDecodeError and ValueError.

Workflow Details

Details