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Pipenv unable to install pystan/fbprophet on Windows - Can't access VisualStudio files #3141

Closed dom-devel closed 2 years ago

dom-devel commented 6 years ago

Issue description

I'm trying to install pystan & fbprophet using Pipenv.

On my default environment, installed primarily using pip, I have successfully installed both.

I followed the installation instructions for pystan here. And fbprophet worked after without additional config.

For my actual projects I prefer to use pipenv however for easier maintenance and sharing.

When trying to install fbprophet into a local pipenv environment (which uses conda to create the env), it fails:

I suspect this is a pystan fail, rather than fbprophet, but the main thing that has changed from my default env to this one, is I use pipenv to manage this one. Any idea what could be causing this discrepancy?

 c:\users\dominic\.virtualenvs\consulting_data_loading_platform-okl6yybl\lib\site-packages\pystan\stan\lib\stan_math\stan/math/rev/mat/fun/matrix_exp_multiply.hpp(71): note: see reference to function template instantiation 'Eigen::Matrix<stan::math::var,-1,-1,0,-1,-1> stan::math::matrix_exp<stan::math::var>(const Eigen::Matrix<stan::math::var,-1,-1,0,-1,-1> &)' being compiled
    stanfit4anon_model_db8febf10f23d7fa27a62fbcfd7f17b2_3087942691110965889.obj : warning LNK4197: export 'PyInit_stanfit4anon_model_db8febf10f23d7fa27a62fbcfd7f17b2_3087942691110965889' specified multiple times; using first specification
       Creating library C:\Users\Dominic\AppData\Local\Temp\tmpbhkrmkpd\Users\Dominic\AppData\Local\Temp\tmpbhkrmkpd\stanfit4anon_model_db8febf10f23d7fa27a62fbcfd7f17b2_3087942691110965889.cp36-win_amd64.lib and object C:\Users\Dominic\AppData\Local\Temp\tmpbhkrmkpd\Users\Dominic\AppData\Local\Temp\tmpbhkrmkpd\stanfit4anon_model_db8febf10f23d7fa27a62fbcfd7f17b2_3087942691110965889.cp36-win_amd64.exp
    stanfit4anon_model_db8febf10f23d7fa27a62fbcfd7f17b2_3087942691110965889.obj : error LNK2001: unresolved external symbol "public: double & __cdecl stan::math::internal::empty_broadcast_array<double,class Eigen::Matrix<double,-1,1,0,-1,1> >::operator[](int)" (??A?$empty_broadcast_array@NV?$Matrix@N$0?0$00$0A@$0?0$00@Eigen@@@internal@math@stan@@QEAAAEANH@Z)
    stanfit4anon_model_db8febf10f23d7fa27a62fbcfd7f17b2_3087942691110965889.obj : error LNK2001: unresolved external symbol "public: double & __cdecl stan::math::internal::empty_broadcast_array<double,double>::operator[](int)" (??A?$empty_broadcast_array@NN@internal@math@stan@@QEAAAEANH@Z)
    stanfit4anon_model_db8febf10f23d7fa27a62fbcfd7f17b2_3087942691110965889.obj : error LNK2001: unresolved external symbol "public: double & __cdecl stan::math::internal::empty_broadcast_array<double,class std::vector<double,class std::allocator<double> > >::operator[](int)" (??A?$empty_broadcast_array@NV?$vector@NV?$allocator@N@std@@@std@@@internal@math@stan@@QEAAAEANH@Z)
    stanfit4anon_model_db8febf10f23d7fa27a62fbcfd7f17b2_3087942691110965889.obj : error LNK2001: unresolved external symbol "public: double & __cdecl stan::math::internal::empty_broadcast_array<double,int>::operator[](int)" (??A?$empty_broadcast_array@NH@internal@math@stan@@QEAAAEANH@Z)
    C:\Users\Dominic\AppData\Local\Temp\tmpbhkrmkpd\stanfit4anon_model_db8febf10f23d7fa27a62fbcfd7f17b2_3087942691110965889.cp36-win_amd64.pyd : fatal error LNK1120: 4 unresolved externals
    error: command 'C:\\Program Files (x86)\\Microsoft Visual Studio 14.0\\VC\\BIN\\x86_amd64\\link.exe' failed with exit status 1120

    ----------------------------------------

Error:  An error occurred while installing fbprophet!
  Failed building wheel for fbprophet
Command "c:\users\dominic\.virtualenvs\consulting_data_loading_platform-okl6yybl\scripts\python.exe -u -c "import setuptools, tokenize;__file__='C:\\Users\\Dominic\\AppData\\Local\\Temp\\pip-install-350slw1p\\fbprophet\\setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record C:\Users\Dominic\AppData\Local\Temp\pip-record-uu3812al\install-record.txt --single-version-externally-managed --compile --install-headers c:\users\dominic\.virtualenvs\consulting_data_loading_platform-okl6yybl\include\site\python3.6\fbprophet" failed with error code 1 in C:\Users\Dominic\AppData\Local\Temp\pip-install-350slw1p\fbprophet\

System setup

Recreation

I've been able to re-create this twice, having clean installed anaconda, switched the primary installation of python in anaconda to 3.6.

Follow the installation instructions for pystan here. Install fbprophet after in local env.

Then generate a local pipenv environment and attempt to do the same.

$ pipenv --support Pipenv version: `'2018.10.13'` Pipenv location: `'c:\\programdata\\anaconda3\\lib\\site-packages\\pipenv'` Python location: `'c:\\programdata\\anaconda3\\python.exe'` Python installations found: - `5.3.0`: `C:\ProgramData\Anaconda3\python.exe` - `4.2.0`: `C:\Users\Dominic\Anaconda3\python.exe` - `3.5`: `C:\Users\Dominic\Anaconda3\Scripts\python.exe` - `2.7`: `C:\Users\Dominic\AppData\Local\Enthought\Canopy\User\python.exe` - `2.7`: `C:\Users\Dominic\.windows-build-tools\python27\python.exe` PEP 508 Information: ``` {'implementation_name': 'cpython', 'implementation_version': '3.6.6', 'os_name': 'nt', 'platform_machine': 'AMD64', 'platform_python_implementation': 'CPython', 'platform_release': '10', 'platform_system': 'Windows', 'platform_version': '10.0.17134', 'python_full_version': '3.6.6', 'python_version': '3.6', 'sys_platform': 'win32'} ``` System environment variables: - `ALIASES` - `ALLUSERSPROFILE` - `ANSICON` - `ANSICON_DEF` - `APPDATA` - `ARCHITECTURE` - `CLOUDSDK_PYTHON` - `CMDER_ROOT` - `COMMONPROGRAMFILES` - `COMMONPROGRAMFILES(X86)` - `COMMONPROGRAMW6432` - `COMPOSE_CONVERT_WINDOWS_PATHS` - `COMPUTERNAME` - `COMSPEC` - `CONEMUANSI` - `CONEMUANSILOG` - `CONEMUARGS` - `CONEMUARGS2` - `CONEMUBACKHWND` - `CONEMUBASEDIR` - `CONEMUBASEDIRSHORT` - `CONEMUBUILD` - `CONEMUCFGDIR` - `CONEMUCONFIG` - `CONEMUDIR` - `CONEMUDRAWHWND` - `CONEMUDRIVE` - `CONEMUHOOKS` - `CONEMUHWND` - `CONEMUPALETTE` - `CONEMUPID` - `CONEMUSERVERPID` - `CONEMUTASK` - `CONEMUWORKDIR` - `CONEMUWORKDRIVE` - `DOCKER_CERT_PATH` - `DOCKER_HOST` - `DOCKER_MACHINE_NAME` - `DOCKER_TLS_VERIFY` - `DOCKER_TOOLBOX_INSTALL_PATH` - `DRIVERDATA` - `FPS_BROWSER_APP_PROFILE_STRING` - `FPS_BROWSER_USER_PROFILE_STRING` - `GIT_INSTALL_ROOT` - `GOOGLE_APPLICATION_CREDENTIALS` - `GYP_MSVS_VERSION` - `HOME` - `HOMEDRIVE` - `HOMEPATH` - `LOCALAPPDATA` - `LOGONSERVER` - `NO_PROXY` - `NUMBER_OF_PROCESSORS` - `ONEDRIVE` - `OS` - `PATH` - `PATHEXT` - `PLINK_PROTOCOL` - `PROCESSOR_ARCHITECTURE` - `PROCESSOR_IDENTIFIER` - `PROCESSOR_LEVEL` - `PROCESSOR_REVISION` - `PROGRAMDATA` - `PROGRAMFILES` - `PROGRAMFILES(X86)` - `PROGRAMW6432` - `PROMPT` - `PSMODULEPATH` - `PUBLIC` - `SESSIONNAME` - `SSH_AGENT_PID` - `SSH_AUTH_SOCK` - `SVN_SSH` - `SYSTEMDRIVE` - `SYSTEMROOT` - `TEMP` - `TERM` - `TMP` - `USER-ALIASES` - `USERDOMAIN` - `USERDOMAIN_ROAMINGPROFILE` - `USERNAME` - `USERPROFILE` - `VBOX_MSI_INSTALL_PATH` - `VERBOSE-OUTPUT` - `VS140COMNTOOLS` - `WINDIR` - `PYTHONDONTWRITEBYTECODE` - `PIP_SHIMS_BASE_MODULE` - `PIP_PYTHON_PATH` Pipenvûspecific environment variables: Debugûspecific environment variables: - `PATH`: `c:\programdata\anaconda3\Library\bin;C:\Users\Dominic\Documents\Cmder Test\bin;C:\Users\Dominic\Documents\Cmder Test\vendor\conemu-maximus5\ConEmu\Scripts;C:\Users\Dominic\Documents\Cmder Test\vendor\conemu-maximus5;C:\Users\Dominic\Documents\Cmder Test\vendor\conemu-maximus5\ConEmu;C:\ProgramData\Anaconda3;C:\ProgramData\Anaconda3\Library\mingw-w64\bin;C:\ProgramData\Anaconda3\Library\usr\bin;C:\ProgramData\Anaconda3\Library\bin;C:\ProgramData\Anaconda3\Scripts;C:\ProgramData\Oracle\Java\javapath;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Users\Dominic\AppData\Local\Google\Cloud SDK\google-cloud-sdk\platform\gsutil;C:\Users\Dominic\AppData\Roaming\npm;C:\Program Files (x86)\Windows Kits\8.1\Windows Performance Toolkit\;C:\Program Files (x86)\Google\Cloud SDK\google-cloud-sdk\bin;C:\Users\Dominic\Documents\Development\Projects\dom_blog\node_modules\hugo-bin\vendor;C:\Program Files (x86)\PuTTY\;C:\Program Files (x86)\Airtame;C:\HashiCorp\Vagrant\bin;C:\Program Files\nodejs\;C:\Program Files\PostgreSQL\9.6\bin;C:\Program Files\Amazon\AWSCLI\;C:\Program Files (x86)\Cmder\bin;C:\Program Files (x86)\Cmder\vendor\git-for-windows\cmd;C:\Program Files (x86)\Cmder\vendor\conemu-maximus5\ConEmu\Scripts;C:\Program Files (x86)\Cmder\vendor\conemu-maximus5;C:\Program Files (x86)\Cmder\vendor\conemu-maximus5\ConEmu;C:\ProgramData\Oracle\Java\javapath;C:\WINDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\WINDOWS\System32\WindowsPowerShell\v1.0\;C:\Program Files (x86)\Skype\Phone\;C:\Users\Dominic\AppData\Local\Google\Cloud SDK\google-cloud-sdk\platform\gsutil;C:\Program Files\nodejs\;C:\Program Files (x86)\Windows Kits\8.1\Windows Performance Toolkit\;C:\Users\Dominic\AppData\Local\Microsoft\WindowsApps;C:\Program Files (x86)\HMA\Users\Dominic\AppData\Local\Google\Cloud SDK\google-cloud-sdk\bin;C:\Users\Dominic\AppData\Local\Google\Cloud SDK\google-cloud-sdk\;C:\Users\Dominic\Documents\Development\Scripts;C:\Users\Dominic\Documents\Development\Scripts\google_analytics_to_csv;C:\Users\Dominic\AppData\Local\Microsoft\Wi;C:\Users\Dominic\AppData\Roaming\npm;;C:\Program Files (x86)\Cmder\vendor\git-for-windows\usr\bin;C:\Program Files (x86)\Cmder\vendor\git-for-windows\usr\share\vim\vim74;C:\Users\Dominic\Documents\Cmder Test\` --------------------------- Contents of `Pipfile` ('C:\\Users\\Dominic\\Documents\\Development\\Projects\\consulting_data_loading_platform\\Pipfile'): ```toml [[source]] url = "https://pypi.org/simple" verify_ssl = true name = "pypi" [packages] django = "==1.11" protobuf = "==3.6.0" google-cloud-bigquery = "*" "psycopg2-binary" = "*" django-rq = "*" google-cloud-storage = "*" pyyaml = "*" django-stronghold = "*" django-allauth = "*" django-debug-toolbar = "*" django-widget-tweaks = "*" pandas = "*" "httplib2" = "*" google-api-python-client = "*" "oauth2client" = "*" fakeredis = "*" django-cron = "*" pystan = "*" numpy = "*" [requires] python_version = "3.6" ``` Contents of `Pipfile.lock` ('C:\\Users\\Dominic\\Documents\\Development\\Projects\\consulting_data_loading_platform\\Pipfile.lock'): ```json { "_meta": { "hash": { "sha256": "4399692adcf48b29704139469ed963840536d91774551c75b806a2930da466ce" }, "pipfile-spec": 6, "requires": { "python_version": "3.6" }, "sources": [ { "name": "pypi", "url": "https://pypi.org/simple", "verify_ssl": true } ] }, "default": { "cachetools": { "hashes": [ "sha256:90f1d559512fc073483fe573ef5ceb39bf6ad3d39edc98dc55178a2b2b176fa3", "sha256:d1c398969c478d336f767ba02040fa22617333293fb0b8968e79b16028dfee35" ], "version": "==2.1.0" }, "certifi": { "hashes": [ "sha256:339dc09518b07e2fa7eda5450740925974815557727d6bd35d319c1524a04a4c", "sha256:6d58c986d22b038c8c0df30d639f23a3e6d172a05c3583e766f4c0b785c0986a" ], "version": "==2018.10.15" }, "chardet": { "hashes": [ "sha256:84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae", "sha256:fc323ffcaeaed0e0a02bf4d117757b98aed530d9ed4531e3e15460124c106691" ], "version": "==3.0.4" }, "click": { "hashes": [ "sha256:2335065e6395b9e67ca716de5f7526736bfa6ceead690adf616d925bdc622b13", "sha256:5b94b49521f6456670fdb30cd82a4eca9412788a93fa6dd6df72c94d5a8ff2d7" ], "version": "==7.0" }, "cython": { "hashes": [ "sha256:019008a69e6b7c102f2ed3d733a288d1784363802b437dd2b91e6256b12746da", "sha256:1441fe19c56c90b8c2159d7b861c31a134d543ef7886fd82a5d267f9f11f35ac", "sha256:1d1a5e9d6ed415e75a676b72200ad67082242ec4d2d76eb7446da255ae72d3f7", "sha256:339f5b985de3662b1d6c69991ab46fdbdc736feb4ac903ef6b8c00e14d87f4d8", "sha256:35bdf3f48535891fee2eaade70e91d5b2cc1ee9fc2a551847c7ec18bce55a92c", "sha256:3d0afba0aec878639608f013045697fb0969ff60b3aea2daec771ea8d01ad112", "sha256:42c53786806e24569571a7a24ebe78ec6b364fe53e79a3f27eddd573cacd398f", "sha256:48b919da89614d201e72fbd8247b5ae8881e296cf968feb5595a015a14c67f1f", "sha256:49906e008eeb91912654a36c200566392bd448b87a529086694053a280f8af2d", "sha256:49fc01a7c9c4e3c1784e9a15d162c2cac3990fcc28728227a6f8f0837aabda7c", "sha256:501b671b639b9ca17ad303f8807deb1d0ff754d1dab106f2607d14b53cb0ff0b", "sha256:5574574142364804423ab4428bd331a05c65f7ecfd31ac97c936f0c720fe6a53", "sha256:6092239a772b3c6604be9e94b9ab4f0dacb7452e8ad299fd97eae0611355b679", "sha256:71ff5c7632501c4f60edb8a24fd0a772e04c5bdca2856d978d04271b63666ef7", "sha256:7dcf2ad14e25b05eda8bdd104f8c03a642a384aeefd25a5b51deac0826e646fa", "sha256:8ca3a99f5a7443a6a8f83a5d8fcc11854b44e6907e92ba8640d8a8f7b9085e21", "sha256:927da3b5710fb705aab173ad630b45a4a04c78e63dcd89411a065b2fe60e4770", "sha256:94916d1ede67682638d3cc0feb10648ff14dc51fb7a7f147f4fedce78eaaea97", "sha256:a3e5e5ca325527d312cdb12a4dab8b0459c458cad1c738c6f019d0d8d147081c", "sha256:a7716a98f0b9b8f61ddb2bae7997daf546ac8fc594be6ba397f4bde7d76bfc62", "sha256:acf10d1054de92af8d5bfc6620bb79b85f04c98214b4da7db77525bfa9fc2a89", "sha256:de46ffb67e723975f5acab101c5235747af1e84fbbc89bf3533e2ea93fb26947", "sha256:df428969154a9a4cd9748c7e6efd18432111fbea3d700f7376046c38c5e27081", "sha256:f5ebf24b599caf466f9da8c4115398d663b2567b89e92f58a835e9da4f74669f", "sha256:f79e45d5c122c4fb1fd54029bf1d475cecc05f4ed5b68136b0d6ec268bae68b6", "sha256:f7a43097d143bd7846ffba6d2d8cd1cc97f233318dbd0f50a235ea01297a096b", "sha256:fceb8271bc2fd3477094ca157c824e8ea840a7b393e89e766eea9a3b9ce7e0c6", "sha256:ff919ceb40259f5332db43803aa6c22ff487e86036ce3921ae04b9185efc99a4" ], "version": "==0.29" }, "defusedxml": { "hashes": [ "sha256:24d7f2f94f7f3cb6061acb215685e5125fbcdc40a857eff9de22518820b0a4f4", "sha256:702a91ade2968a82beb0db1e0766a6a273f33d4616a6ce8cde475d8e09853b20" ], "version": "==0.5.0" }, "django": { "hashes": [ "sha256:0120b3b60760fb0617848b58aaa9702c0bf963320ed472f0879c5c55ab75b64a", "sha256:b6f3b864944276b4fd1d099952112696558f78b77b39188ac92b6c5e80152c30" ], "index": "pypi", "version": "==1.11" }, "django-allauth": { "hashes": [ "sha256:45661b6fe308466154adf54461679fab6f0c6850b10c56dc322fbbb9d47e03d9" ], "index": "pypi", "version": "==0.38.0" }, "django-common-helpers": { "hashes": [ 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"sha256:bc645ef88307bc4ac269ee8ee9e572be814cd4a125c2bb6edb59ffcdc194982d" ], "index": "pypi", "version": "==1.4.3" }, "fakeredis": { "hashes": [ "sha256:0e6d51c0d661fb9a33d6161893888573d39ea3f5c338184c7c514e4aba9f854e", "sha256:1503c41fc75cce80d3184d8aaa13dd4ff41a537e325086abd2080be41da374e0" ], "index": "pypi", "version": "==0.14.0" }, "google-api-core": { "hashes": [ "sha256:35c0fdb7d0ea8e699d46611c31cdbbaef55c4b3905b394f16a8c41800be5de51", "sha256:7cf597628cb9c5ceb24834b30a325dc271d3ba15d868d81c20aa80a77e13be65" ], "version": "==1.5.1" }, "google-api-python-client": { "hashes": [ "sha256:5d5cb02c6f3112c68eed51b74891a49c0e35263380672d662f8bfe85b8114d7c", "sha256:7cc47cf80b25ecd7f3d917ea247bb6c62587514e40604ae29c47c0e4ebd1174b" ], "index": "pypi", "version": "==1.7.4" }, "google-auth": { "hashes": [ "sha256:9ca363facbf2622d9ba828017536ccca2e0f58bd15e659b52f312172f8815530", "sha256:a4cf9e803f2176b5de442763bd339b313d3f1ed3002e3e1eb6eec1d7c9bbc9b4" ], "version": "==1.5.1" }, 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uranusjr commented 6 years ago

Probably related to #3119? (not sure)

kvanslette77 commented 4 years ago

was this ever resolved?

uranusjr commented 4 years ago

I don’t think we ever got enough detail on what the problem is here. Would you be able to dig deeper into why Pipenv is not able to find the same headers as pip?