Closed pklapperich closed 2 years ago
The issue does appear to be due to relationships between keras and tensorflow. If I change Keras to keras = "*"
then I don't have the problem. But doing pipenv install --dev 'tensorflow<2.5.0'
still fails if keras is pinned to <2.5.0
.
@pklapperich If you have the time to do a check, could you test it using this branch of pipenv which upgrade pip from 21.x to 22.0.4 latest: https://github.com/pypa/pipenv/tree/vendor-pip-22.0.3-followup-changes
It failed a lot faster this time at least; only took 2 minutes. Behavior is otherwise the same (I can install to [packages]
but not to [dev]
unless I remove the intel package index).
@pklapperich I think you are going to like this update -- when you tried my branch yesterday I still had two failing tests that by the end of the day I had figured out and reduced down the number of changes in my branch and now all tests are passing. I just tried your example above in my latest branch and it worked--took less than 3 minutes! Check it out:
@pklapperich Ah my bad, I misundersstood that you were having the failure on this step. $ pipenv install -i pypi --verbose --dev tensorflow
So yeah this takes about 10-15 minutes of locking and eventually fails with:
INFO:pipenv.patched.notpip._internal.resolution.resolvelib.reporter:Reporter.ending_round(4859, state)
Reporter.starting_round(4860)
INFO:pipenv.patched.notpip._internal.resolution.resolvelib.reporter:Reporter.starting_round(4860)
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Reporter.ending_round(4860, state)
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Reporter.starting_round(4861)
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Reporter.adding_requirement(SpecifierRequirement('numpy<1.22.0,>=1.21.4'), LinkCandidate('https://files.pythonhosted.org/packages/43/6b/c6770cceb3171c7d67b9de3c3002cb3a67086dab5eb8c9cced5cb36412bd/mkl_random-1.2.2-11-cp38-cp38-manylinux2014_x86_64.whl#sha256=180b0bd32300e29895a385806bbbc4c4d3a19683c95dda1c87ab457200eac53f (from https://pypi.org/simple/mkl-random/) (requires-python:>=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*)'))
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Reporter.adding_requirement(SpecifierRequirement('mkl'), LinkCandidate('https://files.pythonhosted.org/packages/60/46/c1eb7500836c8325fdb6c4db2488b951a3e6357f2b3c622d8a7e0d8284c8/mkl_fft-1.3.1-11-cp38-cp38-manylinux2014_x86_64.whl#sha256=27a31ce7ae38038c01647f072999d99ce75bfc99a4edfc6add41fb340a0d7de6 (from https://pypi.org/simple/mkl-fft/) (requires-python:>=3.6)'))
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Reporter.adding_requirement(SpecifierRequirement('numpy<1.22.0,>=1.21.4'), LinkCandidate('https://files.pythonhosted.org/packages/60/46/c1eb7500836c8325fdb6c4db2488b951a3e6357f2b3c622d8a7e0d8284c8/mkl_fft-1.3.1-11-cp38-cp38-manylinux2014_x86_64.whl#sha256=27a31ce7ae38038c01647f072999d99ce75bfc99a4edfc6add41fb340a0d7de6 (from https://pypi.org/simple/mkl-fft/) (requires-python:>=3.6)'))
INFO:pipenv.patched.notpip._internal.resolution.resolvelib.reporter:Reporter.adding_requirement(SpecifierRequirement('numpy<1.22.0,>=1.21.4'), LinkCandidate('https://files.pythonhosted.org/packages/60/46/c1eb7500836c8325fdb6c4db2488b951a3e6357f2b3c622d8a7e0d8284c8/mkl_fft-1.3.1-11-cp38-cp38-manylinux2014_x86_64.whl#sha256=27a31ce7ae38038c01647f072999d99ce75bfc99a4edfc6add41fb340a0d7de6 (from https://pypi.org/simple/mkl-fft/) (requires-python:>=3.6)'))
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ERROR:pip.subprocessor:[present-diagnostic] Preparing metadata (pyproject.toml) exited with 1
Traceback (most recent call last):
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/operations/build/metadata.py", line 35, in generate_metadata
distinfo_dir = backend.prepare_metadata_for_build_wheel(metadata_dir)
File "/home/matteius/pipenv/pipenv/patched/notpip/_vendor/pep517/wrappers.py", line 188, in prepare_metadata_for_build_wheel
return self._call_hook('prepare_metadata_for_build_wheel', {
File "/home/matteius/pipenv/pipenv/patched/notpip/_vendor/pep517/wrappers.py", line 322, in _call_hook
self._subprocess_runner(
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/utils/subprocess.py", line 252, in runner
call_subprocess(
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/utils/subprocess.py", line 224, in call_subprocess
raise error
pipenv.patched.notpip._internal.exceptions.InstallationSubprocessError: Preparing metadata (pyproject.toml) exited with 1
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/home/matteius/pipenv/pipenv/utils.py", line 881, in resolve
results = resolver.resolve(self.constraints, check_supported_wheels=False)
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/resolution/resolvelib/resolver.py", line 94, in resolve
result = self._result = resolver.resolve(
File "/home/matteius/pipenv/pipenv/patched/notpip/_vendor/resolvelib/resolvers.py", line 481, in resolve
state = resolution.resolve(requirements, max_rounds=max_rounds)
File "/home/matteius/pipenv/pipenv/patched/notpip/_vendor/resolvelib/resolvers.py", line 380, in resolve
success = self._backtrack()
File "/home/matteius/pipenv/pipenv/patched/notpip/_vendor/resolvelib/resolvers.py", line 320, in _backtrack
success = _patch_criteria()
File "/home/matteius/pipenv/pipenv/patched/notpip/_vendor/resolvelib/resolvers.py", line 309, in _patch_criteria
if not candidates:
File "/home/matteius/pipenv/pipenv/patched/notpip/_vendor/resolvelib/structs.py", line 151, in __bool__
return bool(self._sequence)
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
return any(self)
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
return (c for c in iterator if id(c) not in self._incompatible_ids)
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
candidate = func()
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/resolution/resolvelib/factory.py", line 215, in _make_candidate_from_link
self._link_candidate_cache[link] = LinkCandidate(
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/resolution/resolvelib/candidates.py", line 292, in __init__
super().__init__(
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/resolution/resolvelib/candidates.py", line 159, in __init__
self.dist = self._prepare()
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/resolution/resolvelib/candidates.py", line 228, in _prepare
dist = self._prepare_distribution()
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/resolution/resolvelib/candidates.py", line 303, in _prepare_distribution
return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/operations/prepare.py", line 487, in prepare_linked_requirement
return self._prepare_linked_requirement(req, parallel_builds)
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/operations/prepare.py", line 556, in _prepare_linked_requirement
dist = _get_prepared_distribution(
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/operations/prepare.py", line 58, in _get_prepared_distribution
abstract_dist.prepare_distribution_metadata(finder, build_isolation)
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/distributions/sdist.py", line 47, in prepare_distribution_metadata
self.req.prepare_metadata()
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/req/req_install.py", line 523, in prepare_metadata
self.metadata_directory = generate_metadata(
File "/home/matteius/pipenv/pipenv/patched/notpip/_internal/operations/build/metadata.py", line 37, in generate_metadata
raise MetadataGenerationFailed(package_details=details) from error
pipenv.patched.notpip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/home/matteius/pipenv/pipenv/resolver.py", line 766, in <module>
main()
File "/home/matteius/pipenv/pipenv/resolver.py", line 760, in main
_main(parsed.pre, parsed.clear, parsed.verbose, parsed.system, parsed.write,
File "/home/matteius/pipenv/pipenv/resolver.py", line 743, in _main
resolve_packages(pre, clear, verbose, system, write, requirements_dir, packages, dev)
File "/home/matteius/pipenv/pipenv/resolver.py", line 704, in resolve_packages
results, resolver = resolve(
File "/home/matteius/pipenv/pipenv/resolver.py", line 685, in resolve
return resolve_deps(
File "/home/matteius/pipenv/pipenv/utils.py", line 1376, in resolve_deps
results, hashes, markers_lookup, resolver, skipped = actually_resolve_deps(
File "/home/matteius/pipenv/pipenv/utils.py", line 1105, in actually_resolve_deps
resolver.resolve()
File "/home/matteius/pipenv/pipenv/utils.py", line 883, in resolve
raise ResolutionFailure(message=str(e))
pipenv.exceptions.ResolutionFailure: ERROR: metadata generation failed
β Locking Failed!
@pklapperich I just found this from upstream pip, that seems relevant to consider since your Pipfile is wide open wrt to locking much of the dependencies, and I see you are actually locking something in dev to be older than something the newer packages might depend on : keras = {version="<2.5.0"
https://github.com/pypa/pip/issues/10856#issuecomment-1025748975
@pklapperich Sorry to keep pinging you but that seems to be it in my branch, set keras = {version="", index="pypi"}
in your Pipfile
and then run pipenv install -i pypi --verbose --dev tensorflow
again. Took about a minute or so to run.
Sorry, I was away for a bit.
I noted it works if keras
is unpinned or the intel repo removed. We probably don't need that pinned anymore, so I think that's workable for us.
But what I found that was weird (and looked like a bug) is that tensorflow
could install without --dev
but would fail a lock when using --dev
. The other thing that's weird is that removing the intel
repo is enough to make everything work. There's not much in the intel
repo. It does have tensorflow
, but nothing in the 2.x series.
With your latest branch things aren't working quite the same, but I do still see some of the same behavior, and it looks like the reason I was able to install tensorflow
without --dev
is that the keras
version pinned in dev was not respected.
[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"
[[source]]
url = "https://pypi.anaconda.org/intel/simple"
verify_ssl = true
name = "intel"
[packages]
tensorflow = {version="==2.7.0", index="pypi"}
[dev-packages]
keras = {version="<2.7.0", index="pypi"}
[requires]
python_version = "3.8"
This locks both tensorflow and keras to ==2.7.0
in both the default
and develop
sections of the lock file, which seems wrong.
[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"
[packages]
[dev-packages]
tensorflow = {version="==2.7.0", index="pypi"}
keras = {version="<2.7.0", index="pypi"}
[requires]
python_version = "3.8"
this fails deliberately with an error which says it's impossible. Fair.
[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"
[packages]
[dev-packages]
tensorflow = {version="=<2.5.0", index="pypi"}
keras = {version="<2.5.0", index="pypi"}
[requires]
python_version = "3.8"
this works and locks keras==2.4.3
and tensorflow==2.4.4
[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"
[[source]]
url = "https://pypi.anaconda.org/intel/simple"
verify_ssl = true
name = "intel"
[packages]
[dev-packages]
tensorflow = {version="=<2.5.0", index="pypi"}
keras = {version="<2.5.0", index="pypi"}
[requires]
python_version = "3.8"
this fails.
[[source]]
url = "https://pypi.org/simple"
verify_ssl = true
name = "pypi"
[[source]]
url = "https://pypi.anaconda.org/intel/simple"
verify_ssl = true
name = "intel"
[packages]
[dev-packages]
tensorflow = {version="==2.4.4", index="pypi"}
keras = {version="==2.4.3", index="pypi"}
[requires]
python_version = "3.8"
even this fails, when that's specifically what was locked above when the intel repo wasn't present.
I wonder if this outstanding PR will essentially fix this issue: https://github.com/pypa/pipenv/pull/5234
Can you try new version of pipenv==2022.8.15
?
Issue description
I have a Pipfile to which I added a 2nd
[[Sources]]
section in order to pull in some of Intel's MKL packages. Even when explicitly marking all packages in the Pipfile asindex="pypi"
, locking runs for hours and eventually fails when I try to includetensorflow
as a[dev-package]
. But it does work just fine when tensorflow is included in[packages]
Steps to Reproduce
Pipfile
[[source]] url = "https://pypi.org/simple" verify_ssl = true name = "pypi"
[[source]]
url = "https://pypi.anaconda.org/intel/simple" verify_ssl = true name = "intel"
[packages] numpy = {version="", index="pypi"} scipy = {version="", index="pypi"} scikit-learn = {version="", index="pypi"} scikit-learn-intelex = {version="", index="pypi"}
dpcpp_cpp_rt = {version="*", index="pypi"}
pywavelets = {version="*", index="pypi"}
tensorpac = {version="*", index="pypi"}
matplotlib = {version="*", index="pypi"}
onnxruntime = {version="", index="pypi"} neurokit2 = {version="", index="pypi"}
[dev-packages] keras = {version="<2.5.0", index="pypi"} onnxmltools = {version="", index="pypi"} skl2onnx = {version="", index="pypi"} tf2onnx = {version="", index="pypi"} pyserial = {version="", index="pypi"}
[requires] python_version = "3.8"
pipenv lock --clear && pipenv sync --dev
pipenv install -i pypi --dev tensorflow
Spins for hours on "Locking..." and eventually fails.Workarounds
[[sources]]
section for intel, leaving behind onlypypi
defined. Step 3 is successful.[[sources]]
but instead of step 3, dopipenv install tensorflow
. This successfully locks.Expected result
I would expect that anything which can be installed to
[packages]
successfully should also install succesfully to[dev_packages]
I think my steps might be reproducing #4926 but I don't see anything on that issue about different behavior when installing with
--dev
.Actual result
Eventually the lock fails (after 8h20m), but when using verbose it writes gigabytes (8.7) of log messages to the screen.
pipenv install -i pypi --dev tensorflow --verbose > pipenv.log; tail -n 500 pipenv.log
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LinkCandidate('https://files.pythonhosted.org/packages/68/08/e5fe13998ed4c08300cea8cd14e249bf17340b1dd6f5b859ed00d3914125/mkl-2021.4.0-py2.py3-none-manylinux1_x86_64.whl#sha256=398dbf2b0d12acaf54117a5210e8f191827f373d362d796091d161f610c1ebfb (from https://pypi.org/simple/mkl/)')) Reporter.adding_requirement(SpecifierRequirement('tbb==2021.*'), LinkCandidate('https://files.pythonhosted.org/packages/68/08/e5fe13998ed4c08300cea8cd14e249bf17340b1dd6f5b859ed00d3914125/mkl-2021.4.0-py2.py3-none-manylinux1_x86_64.whl#sha256=398dbf2b0d12acaf54117a5210e8f191827f373d362d796091d161f610c1ebfb (from https://pypi.org/simple/mkl/)')) INFO:pipenv.patched.notpip._internal.resolution.resolvelib.reporter:Reporter.adding_requirement(SpecifierRequirement('tbb==2021.*'), 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LinkCandidate('https://files.pythonhosted.org/packages/60/46/c1eb7500836c8325fdb6c4db2488b951a3e6357f2b3c622d8a7e0d8284c8/mkl_fft-1.3.1-11-cp38-cp38-manylinux2014_x86_64.whl#sha256=27a31ce7ae38038c01647f072999d99ce75bfc99a4edfc6add41fb340a0d7de6 (from https://pypi.org/simple/mkl-fft/) (requires-python:>=3.6)')) INFO:pipenv.patched.notpip._internal.resolution.resolvelib.reporter:Reporter.adding_requirement(SpecifierRequirement('numpy<1.22.0,>=1.21.4'), LinkCandidate('https://files.pythonhosted.org/packages/60/46/c1eb7500836c8325fdb6c4db2488b951a3e6357f2b3c622d8a7e0d8284c8/mkl_fft-1.3.1-11-cp38-cp38-manylinux2014_x86_64.whl#sha256=27a31ce7ae38038c01647f072999d99ce75bfc99a4edfc6add41fb340a0d7de6 (from https://pypi.org/simple/mkl-fft/) (requires-python:>=3.6)')) Reporter.adding_requirement(SpecifierRequirement('dpcpp_cpp_rt'), 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Reporter.pinning(LinkCandidate('https://files.pythonhosted.org/packages/88/2c/a54b6b31a3f44783a3ecde93107158a3921bbdff1daf433bb5b3b675f5e9/mkl_fft-1.3.0-1-cp38-cp38-manylinux2014_x86_64.whl#sha256=4d4940f6c5a0b98fef98b62c94a4aa73c8c7503ee47466f2973e24876c783f4f (from https://pypi.org/simple/mkl-fft/) (requires-python:>=3.6)')) INFO:pipenv.patched.notpip._internal.resolution.resolvelib.reporter:Reporter.pinning(LinkCandidate('https://files.pythonhosted.org/packages/88/2c/a54b6b31a3f44783a3ecde93107158a3921bbdff1daf433bb5b3b675f5e9/mkl_fft-1.3.0-1-cp38-cp38-manylinux2014_x86_64.whl#sha256=4d4940f6c5a0b98fef98b62c94a4aa73c8c7503ee47466f2973e24876c783f4f (from https://pypi.org/simple/mkl-fft/) (requires-python:>=3.6)')) Reporter.ending_round(1999999, state) INFO:pipenv.patched.notpip._internal.resolution.resolvelib.reporter:Reporter.ending_round(1999999, state) Traceback (most recent call last): File "/usr/lib/python3.10/site-packages/pipenv/resolver.py", line 766, in$ pipenv --support
Pipenv version: `'2022.1.8'` Pipenv location: `'/usr/lib/python3.10/site-packages/pipenv'` Python location: `'/usr/bin/python'` Python installations found: - `3.10.2`: `/usr/bin/python` - `3.10.2`: `/usr/bin/python3` - `3.8.12`: `/usr/bin/python3.8` - `2.7.18`: `/usr/bin/python2` - `2.7.18`: `/usr/bin/python2.7` PEP 508 Information: ``` {'implementation_name': 'cpython', 'implementation_version': '3.10.2', 'os_name': 'posix', 'platform_machine': 'x86_64', 'platform_python_implementation': 'CPython', 'platform_release': '5.16.0-arch1-1', 'platform_system': 'Linux', 'platform_version': '#1 SMP PREEMPT Mon, 10 Jan 2022 20:11:47 +0000', 'python_full_version': '3.10.2', 'python_version': '3.10', 'sys_platform': 'linux'} ``` System environment variables: - `SHELL` - `PIPENV_VENV_IN_PROJECT` - `LESS` - `NVM_INC` - `LANGUAGE` - `DOTNET_ROOT` - `LARCH_PATH` - `EDITOR` - `ANDROID_NDK` - `PWD` - `LOGNAME` - `XDG_SESSION_TYPE` - `MOTD_SHOWN` - `HOME` - `LCLIMPORTDIR` - `LANG` - `GITHUB_TOKEN` - `LS_COLORS` - `PYTHONSTARTUP` - `SSH_CONNECTION` - `ANDROID_NDK_HOME` - `DOTNET_BUNDLE_EXTRACT_BASE_DIR` - `JONPROMPT` - `NVM_DIR` - `XDG_SESSION_CLASS` - `ANDROID_HOME` - `TERM` - `KIRBY_IDX` - `USER` - `DISPLAY` - `SHLVL` - `NVM_CD_FLAGS` - `PAGER` - `LC_MESSAGES` - `HGUSER` - `XDG_SESSION_ID` - `MOZ_PLUGIN_PATH` - `HEROKU_AC_COMMANDS_PATH` - `XDG_RUNTIME_DIR` - `PS1` - `SSH_CLIENT` - `EMAIL` - `PATH` - `HEROKU_AC_ANALYTICS_DIR` - `ABSROOT` - `DBUS_SESSION_BUS_ADDRESS` - `HG` - `NVM_BIN` - `MAIL` - `SSH_TTY` - `HGEDITOR` - `_` - `PIP_SHIMS_BASE_MODULE` - `PIP_DISABLE_PIP_VERSION_CHECK` - `PYTHONDONTWRITEBYTECODE` - `PIP_PYTHON_PATH` - `PYTHONFINDER_IGNORE_UNSUPPORTED` Pipenvβspecific environment variables: - `PIPENV_VENV_IN_PROJECT`: `1` Debugβspecific environment variables: - `PATH`: `/opt/gcc-arm-none-eabi-6-2017-q2-update/bin:/usr/local/sbin:/usr/local/bin:/usr/bin:/opt/android-sdk/platform-tools:/usr/lib/jvm/default/bin:/usr/lib32/jvm/default/bin:/opt/ti/msp-flasher:/opt/ti/mspgcc/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl:/home/paulk//bin/:/home/paulk/.gem/ruby/2.3.0/bin:/opt/android-sdk/platform-tools/:/home/paulk/.bin:/home/paulk/.yarn/bin` - `SHELL`: `/bin/bash` - `EDITOR`: `vim` - `LANG`: `en_US.utf8` - `PWD`: `/home/paulk` ---------------------------