Revise bundles and improve logging

FYI @ekatef

Checklist

[x] I consent to the release of this PR's code under the AGPLv3 license and non-code contributions under CC0-1.0 and CC-BY-4.0.
[ ] I tested my contribution locally and it seems to work fine.
[ ] Code and workflow changes are sufficiently documented.
[ ] Newly introduced dependencies are added to envs/environment.yaml and doc/requirements.txt.
[ ] Changes in configuration options are added in all of config.default.yaml and config.tutorial.yaml.
[ ] Add a test config or line additions to test/ (note tests are changing the config.tutorial.yaml)
[ ] Changes in configuration options are also documented in doc/configtables/*.csv and line references are adjusted in doc/configuration.rst and doc/tutorial.rst.
[x] A note for the release notes doc/release_notes.rst is amended in the format of previous release notes, including reference to the requested PR.