boundaries is slow - Githubissues

pyranges / pyranges_1.x

PyRanges as a DataFrame subclass.

MIT License

10 stars 2 forks source link

Open marco-mariotti opened 2 months ago

marco-mariotti commented 2 months ago

Must optimize. Try loading a human genome gtf and run

gr.boundaries ('transcript_id')

takes forever, and really shouldn't

endrebak commented 2 months ago

Will look into after phd revisions done.

marco-mariotti commented 2 months ago

no worries, it's a reminder for myself