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pyranges / pyrle

Numerical Run Length Encoding and Arithmetic in Cython
https://biocore-ntnu.github.io/pyranges/an-introduction-to-rles.html
MIT License
16 stars 3 forks source link

File "pyrle\src\coverage.pyx", line 28, in pyrle.src.coverage._coverage ValueError: Buffer dtype mismatch, expected 'long' but got 'long long' #7

Open haritha1216-1994 opened 1 year ago

haritha1216-1994 commented 1 year ago

Traceback (most recent call last): File "c:\Users\HARITHA A\Desktop\work\current work\practise\new.py", line 63, in print('midpoint_coverage ', midpoint_cov(frg_mid_point(frg_flank), sample_file_cov(chr))) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "c:\Users\HARITHA A\Desktop\work\current work\practise\new.py", line 61, in midpoint_cov midpoint_coverage = (frg_midpoint_range.to_rle()).astype(np.int64) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\pyranges_main.py", line 5881, in to_rle return _to_rle(self, value_col, strand=strand, rpm=rpm, nb_cpu=nb_cpu) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\methods\to_rle.py", line 18, in _to_rle result = pyrange_apply_single(coverage, ranges, kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\multithreaded.py", line 342, in pyrange_apply_single result = call_f_single(function, nparams, df, kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyranges\multithreaded.py", line 28, in call_f_single return f.remote(df, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^ File "C:\Users\HARITHA A\anaconda3\envs\sample\Lib\site-packages\pyrle\methods.py", line 154, in coverage runs, values = _coverage(_df.Position.values, _df.Value.values) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "pyrle\src\coverage.pyx", line 28, in pyrle.src.coverage._coverage ValueError: Buffer dtype mismatch, expected 'long' but got 'long long'

haritha1216-1994 commented 1 year ago

While running to rle () function shows the above errors

endrebak commented 1 year ago

I do not have any way to test and debug stuff on windows unfortunately. I'd accept PRs