Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
Another simple import, with no new subcommands to be added.
This replaces #1173's macOS multiarch approach with the upstream samtools/htslib#1587 approach. The macOS Py3.11+ CI builds are multiarch and show that this approach still works in the pysam context.
We also backport samtools/htslib#1665, as that should improve matters for #1195 and perhaps #1193.
Another simple import, with no new subcommands to be added.
This replaces #1173's macOS multiarch approach with the upstream samtools/htslib#1587 approach. The macOS Py3.11+ CI builds are multiarch and show that this approach still works in the pysam context.
We also backport samtools/htslib#1665, as that should improve matters for #1195 and perhaps #1193.