search

pysam-developers / pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
https://pysam.readthedocs.io/en/latest/
MIT License
779 stars 274 forks source link

Pin cython<4 #1218

Closed ahvigil closed 1 year ago

ahvigil commented 1 year ago

addresses https://github.com/pysam-developers/pysam/issues/1217 by adding a pin to cython <4 so future cython releases don't break current version builds.

jmarshall commented 1 year ago

Thanks for bringing this up. I've incorporated your commit into PR #1219, so we can review these related changes together.

jmarshall commented 1 year ago

Thanks. I've now merged a squashed version of this as a23ba53a4db9edabafeb9aa5a0a96b9c5ee6ae43.