Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
Installing pysam with conda in an environment with Python version 3.10.12 the attempt to install pysam results in
Could not solve for environment specs
The following packages are incompatible
└─ pysam 0.21** is installable with the potential options
├─ pysam 0.21.0 would require
│ └─ python >=3.10,<3.11.0a0 , which can be installed;
├─ pysam 0.21.0 would require
│ └─ python >=3.6,<3.7.0a0 , which can be installed;
├─ pysam 0.21.0 would require
│ └─ python >=3.7,<3.8.0a0 , which can be installed;
├─ pysam 0.21.0 would require
│ └─ python >=3.8,<3.9.0a0 , which can be installed;
└─ pysam 0.21.0 would require
└─ python >=3.9,<3.10.0a0 , which can be installed.
Any ideas (other than downgrading the environment)? Who maintains the conda build?
Hi,
Installing pysam with conda in an environment with Python version 3.10.12 the attempt to install pysam results in
Any ideas (other than downgrading the environment)? Who maintains the conda build?