Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
get_query_sequences cannot return the orientation of deletion base, which is one is the build in features of samtools. Will pysam support this feature? Thank you.
get_query_sequencescannot return the orientation of deletion base, which is one is the build in features of samtools. Will pysam support this feature? Thank you.