Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
Fix 6½ year old incorrect cimport statements that accidentally depended on get_pysam_version()'s addition to sys.path.
Add a second test commit (which hardcodes a version number in place of the existing get_pysam_version() code) temporarily to do a full CI check on the change.
That succeeded (see 2d67777b1c2d80bef1753c66bb0c36e18f78a9dc and run 6466884695); replace it with some minor actions workflow updates, to test them.
Fix 6½ year old incorrect
cimportstatements that accidentally depended onget_pysam_version()'s addition tosys.path.Add a second test commit (which hardcodes a version number in place of the existing
get_pysam_version()code) temporarily to do a full CI check on the change.That succeeded (see 2d67777b1c2d80bef1753c66bb0c36e18f78a9dc and run 6466884695); replace it with some minor actions workflow updates, to test them.