Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
I am running fetch_ucsc.py from circexplorer2. It calls for pysam that I downloaded using bioconda, on a conda environment just created to avoid conflicts while setting up circexplorer2.
But in the init of pysam,
I get "from pysam.libchtslib import *
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory"
and also
"from pysam.libcsamtools import *
ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory"
Hello,
I am running fetch_ucsc.py from circexplorer2. It calls for pysam that I downloaded using bioconda, on a conda environment just created to avoid conflicts while setting up circexplorer2. But in the init of pysam, I get "from pysam.libchtslib import * ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory"
and also "from pysam.libcsamtools import * ImportError: libcrypto.so.1.0.0: cannot open shared object file: No such file or directory"
if i comment import libchtslib
Any help would be appreciated!