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pysam-developers / pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
https://pysam.readthedocs.io/en/latest/
MIT License
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Add missing SQ tags as per the spec #1238

Closed nh13 closed 10 months ago

nh13 commented 11 months ago

See #1237

jmarshall commented 10 months ago

Thanks. I've added a couple missing from other headers too. No need to reorder them just now, as I think the way forward for this functionality is for these two tables to largely go away — see further comments on #1237.

tfenne commented 10 months ago

Thanks @jmarshall !