Feature with cigar - Githubissues

pysam-developers / pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.

https://pysam.readthedocs.io/en/latest/

MIT License

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Feature with cigar #1294

Open DrYak opened 2 months ago

DrYak commented 2 months ago

As requested in comment of issue 1292:

Add with_cigar option to get_aligned_pairs

extra element in tuple containing the CIGAR operatior (without lenght) that each particular position tuple corresponds to.

DrYak commented 2 months ago

(@jmarshall Also could approve the testing workflow, just to make sure the new tests I wrote also pass within GitHub Actions?)