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pysam
Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
https://pysam.readthedocs.io/en/latest/
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Improve cigarstring performance
#1295
Open
limwz01
opened
2 months ago
limwz01
commented
2 months ago
Use direct string manipulation instead of inefficient Python joins
Use direct string manipulation instead of inefficient Python joins