search

pysam-developers / pysam

Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight wrapper of the HTSlib API, the same one that powers samtools, bcftools, and tabix.
https://pysam.readthedocs.io/en/latest/
MIT License
773 stars 274 forks source link

Improve cigarstring performance #1295

Open limwz01 opened 2 months ago

limwz01 commented 2 months ago

Use direct string manipulation instead of inefficient Python joins