is_equivalent_to does not include the defined compartment

pysb / pysb

Python framework for Systems Biology modeling

BSD 2-Clause "Simplified" License

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Closed spgarbet closed 10 years ago

spgarbet commented 11 years ago

The is_equivalent_to doesn't include defined compartment as part of the comparison.

This patch will not work properly until the as_complex_pattern patch is put in place (Issue #76). I needed this modification to get SmolDyn working with PySB. https://github.com/spgarbet/pysb/commit/5abf63bd7a9cc567bef6cb8fea8b4ee5cf3f847e

spgarbet commented 11 years ago

I merged the current head of pysb/pysb master in and this broke again. I have a new patch with test case for you.

jmuhlich commented 10 years ago

Fixed in #87