Unclear if the compute capability is the issue. Buffer tests compile and pass, filtering however fails to compile. Some deprecation warnings about architecture.
pytest output
```
================================================= test session starts =================================================
platform win32 -- Python 3.7.11, pytest-6.2.4, py-1.10.0, pluggy-0.13.1
rootdir: C:\Userfiles\PYME\pyme-warp-drive
collected 15 items
warpdrive\test_buffers.py ............ [ 80%]
warpdrive\test_detection.py FFF [100%]
===================================================== FAILURES =====================================================
__________________________________________ test_repeatability_same_frame ___________________________________________
def test_repeatability_same_frame():
from PYME.localization.FitFactories import AstigGaussGPUFitFR
from PYME.IO import MetaDataHandler
x, _, im = gen_image()
fitter = AstigGaussGPUFitFR.FitFactory(np.atleast_3d(im), mdh)
> results = fitter.FindAndFit(1, cameraMaps=camera_info_manager)
warpdrive\test_detection.py:57:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
..\python-microscopy\PYME\localization\FitFactories\AstigGaussGPUFitFR.py:255: in FindAndFit
self.refresh_warpdrive(cameraMaps)
..\python-microscopy\PYME\localization\FitFactories\AstigGaussGPUFitFR.py:171: in refresh_warpdrive
_warpdrive = warpdrive.detector(small_filter_size, 2 * small_filter_size, guess_psf_sigma_pix)
warpdrive\detector.py:75: in __init__
self.dog_mod = compile_filters()
warpdrive\detector_cu.py:26: in compile_filters
mod = SourceModule(FILTER_SOURCE)
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:358: in __init__
include_dirs,
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:298: in compile
return compile_plain(source, options, keep, nvcc, cache_dir, target)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
source = 'extern "C" {\n/*\nfilter.cu contains various convolution functions for the detector class to call.\n\nAndrew Barentin... uniflargedat[dloc] = (unifsmalldat[dloc]/unifsmallvar[dloc]) - (uniflargedat[dloc]/uniflargevar[dloc]);\n\n}\n\n}\n'
options = ['-arch', 'sm_35', '-m64', '-Ic:\\programdata\\anaconda3\\envs\\pyme\\lib\\site-packages\\pycuda\\cuda']
keep = False, nvcc = 'nvcc'
cache_dir = 'C:\\Users\\Administrator\\AppData\\Local\\pycuda\\pycuda\\Cache\\compiler-cache-v1', target = 'cubin'
def compile_plain(source, options, keep, nvcc, cache_dir, target="cubin"):
from os.path import join
assert target in ["cubin", "ptx", "fatbin"]
if cache_dir:
checksum = _new_md5()
if "#include" in source:
checksum.update(preprocess_source(source, options, nvcc).encode("utf-8"))
else:
checksum.update(source.encode("utf-8"))
for option in options:
checksum.update(option.encode("utf-8"))
checksum.update(get_nvcc_version(nvcc).encode("utf-8"))
from pycuda.characterize import platform_bits
checksum.update(str(platform_bits()).encode("utf-8"))
cache_file = checksum.hexdigest()
cache_path = join(cache_dir, cache_file + "." + target)
try:
cache_file = open(cache_path, "rb")
try:
return cache_file.read()
finally:
cache_file.close()
except Exception:
pass
from tempfile import mkdtemp
file_dir = mkdtemp()
file_root = "kernel"
cu_file_name = file_root + ".cu"
cu_file_path = join(file_dir, cu_file_name)
outf = open(cu_file_path, "w")
outf.write(str(source))
outf.close()
if keep:
options = options[:]
options.append("--keep")
print("*** compiler output in %s" % file_dir)
cmdline = [nvcc, "--" + target] + options + [cu_file_name]
result, stdout, stderr = call_capture_output(
cmdline, cwd=file_dir, error_on_nonzero=False
)
try:
result_f = open(join(file_dir, file_root + "." + target), "rb")
except OSError:
no_output = True
else:
no_output = False
if result != 0 or (no_output and (stdout or stderr)):
if result == 0:
from warnings import warn
warn(
"PyCUDA: nvcc exited with status 0, but appears to have "
"encountered an error"
)
from pycuda.driver import CompileError
raise CompileError(
"nvcc compilation of %s failed" % cu_file_path,
cmdline,
stdout=stdout.decode("utf-8", "replace"),
> stderr=stderr.decode("utf-8", "replace"),
)
E pycuda.driver.CompileError: nvcc compilation of C:\Users\ADMINI~1\AppData\Local\Temp\tmpxzdy86t3\kernel.cu failed
E [command: nvcc --cubin -arch sm_35 -m64 -Ic:\programdata\anaconda3\envs\pyme\lib\site-packages\pycuda\cuda kernel.cu]
E [stdout:
E kernel.cu(34): error: expected a ")"
E
E 1 error detected in the compilation of "kernel.cu".
E nvcc warning : The 'compute_35', 'compute_37', 'compute_50', 'sm_35', 'sm_37' and 'sm_50' architectures are deprecated, and may be removed in a future release (Use -Wno-deprecated-gpu-targets to suppress warning).
E kernel.cu
E ]
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:155: CompileError
----------------------------------------------- Captured stdout call -----------------------------------------------
Density = 10.204081632653068 /um^2
__________________________________________ test_repeatability_multiframe ___________________________________________
def test_repeatability_multiframe():
from PYME.localization.FitFactories import AstigGaussGPUFitFR
from PYME.IO import MetaDataHandler
from PYME.localization.remFitBuf import CameraInfoManager
n_frame_batch = 50
res = []
ims = []
for ind in range(n_frame_batch):
_, _, im = gen_image()
ims.append(im)
> _res = AstigGaussGPUFitFR.FitFactory(np.atleast_3d(im), mdh).FindAndFit(1, cameraMaps=camera_info_manager)
warpdrive\test_detection.py:86:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
..\python-microscopy\PYME\localization\FitFactories\AstigGaussGPUFitFR.py:255: in FindAndFit
self.refresh_warpdrive(cameraMaps)
..\python-microscopy\PYME\localization\FitFactories\AstigGaussGPUFitFR.py:171: in refresh_warpdrive
_warpdrive = warpdrive.detector(small_filter_size, 2 * small_filter_size, guess_psf_sigma_pix)
warpdrive\detector.py:75: in __init__
self.dog_mod = compile_filters()
warpdrive\detector_cu.py:26: in compile_filters
mod = SourceModule(FILTER_SOURCE)
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:358: in __init__
include_dirs,
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:298: in compile
return compile_plain(source, options, keep, nvcc, cache_dir, target)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
source = 'extern "C" {\n/*\nfilter.cu contains various convolution functions for the detector class to call.\n\nAndrew Barentin... uniflargedat[dloc] = (unifsmalldat[dloc]/unifsmallvar[dloc]) - (uniflargedat[dloc]/uniflargevar[dloc]);\n\n}\n\n}\n'
options = ['-arch', 'sm_35', '-m64', '-Ic:\\programdata\\anaconda3\\envs\\pyme\\lib\\site-packages\\pycuda\\cuda']
keep = False, nvcc = 'nvcc'
cache_dir = 'C:\\Users\\Administrator\\AppData\\Local\\pycuda\\pycuda\\Cache\\compiler-cache-v1', target = 'cubin'
def compile_plain(source, options, keep, nvcc, cache_dir, target="cubin"):
from os.path import join
assert target in ["cubin", "ptx", "fatbin"]
if cache_dir:
checksum = _new_md5()
if "#include" in source:
checksum.update(preprocess_source(source, options, nvcc).encode("utf-8"))
else:
checksum.update(source.encode("utf-8"))
for option in options:
checksum.update(option.encode("utf-8"))
checksum.update(get_nvcc_version(nvcc).encode("utf-8"))
from pycuda.characterize import platform_bits
checksum.update(str(platform_bits()).encode("utf-8"))
cache_file = checksum.hexdigest()
cache_path = join(cache_dir, cache_file + "." + target)
try:
cache_file = open(cache_path, "rb")
try:
return cache_file.read()
finally:
cache_file.close()
except Exception:
pass
from tempfile import mkdtemp
file_dir = mkdtemp()
file_root = "kernel"
cu_file_name = file_root + ".cu"
cu_file_path = join(file_dir, cu_file_name)
outf = open(cu_file_path, "w")
outf.write(str(source))
outf.close()
if keep:
options = options[:]
options.append("--keep")
print("*** compiler output in %s" % file_dir)
cmdline = [nvcc, "--" + target] + options + [cu_file_name]
result, stdout, stderr = call_capture_output(
cmdline, cwd=file_dir, error_on_nonzero=False
)
try:
result_f = open(join(file_dir, file_root + "." + target), "rb")
except OSError:
no_output = True
else:
no_output = False
if result != 0 or (no_output and (stdout or stderr)):
if result == 0:
from warnings import warn
warn(
"PyCUDA: nvcc exited with status 0, but appears to have "
"encountered an error"
)
from pycuda.driver import CompileError
raise CompileError(
"nvcc compilation of %s failed" % cu_file_path,
cmdline,
stdout=stdout.decode("utf-8", "replace"),
> stderr=stderr.decode("utf-8", "replace"),
)
E pycuda.driver.CompileError: nvcc compilation of C:\Users\ADMINI~1\AppData\Local\Temp\tmprxzt6emg\kernel.cu failed
E [command: nvcc --cubin -arch sm_35 -m64 -Ic:\programdata\anaconda3\envs\pyme\lib\site-packages\pycuda\cuda kernel.cu]
E [stdout:
E kernel.cu(34): error: expected a ")"
E
E 1 error detected in the compilation of "kernel.cu".
E nvcc warning : The 'compute_35', 'compute_37', 'compute_50', 'sm_35', 'sm_37' and 'sm_50' architectures are deprecated, and may be removed in a future release (Use -Wno-deprecated-gpu-targets to suppress warning).
E kernel.cu
E ]
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:155: CompileError
----------------------------------------------- Captured stdout call -----------------------------------------------
Density = 10.204081632653068 /um^2
______________________________________ test_camera_correction_and_sigma_calc _______________________________________
def test_camera_correction_and_sigma_calc():
import warpdrive as wd
_, _, im = gen_image()
im = im.astype(np.float32)
darkmap = 1 * np.ones_like(im)
varmap = np.ones_like(im)
flatmap = np.ones_like(im)
eperadu = np.float32(0.41)
noise_factor = np.float32(1.0)
em_gain = np.float32(1.0)
corrected = (im - darkmap) * flatmap * eperadu
sigma = np.sqrt(varmap + noise_factor * noise_factor * em_gain * np.max(np.stack([corrected, np.ones_like(im)]), axis=0) + em_gain * em_gain / eperadu)
> _warpdrive = wd.detector()
warpdrive\test_detection.py:114:
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
warpdrive\detector.py:75: in __init__
self.dog_mod = compile_filters()
warpdrive\detector_cu.py:26: in compile_filters
mod = SourceModule(FILTER_SOURCE)
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:358: in __init__
include_dirs,
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:298: in compile
return compile_plain(source, options, keep, nvcc, cache_dir, target)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
source = 'extern "C" {\n/*\nfilter.cu contains various convolution functions for the detector class to call.\n\nAndrew Barentin... uniflargedat[dloc] = (unifsmalldat[dloc]/unifsmallvar[dloc]) - (uniflargedat[dloc]/uniflargevar[dloc]);\n\n}\n\n}\n'
options = ['-arch', 'sm_35', '-m64', '-Ic:\\programdata\\anaconda3\\envs\\pyme\\lib\\site-packages\\pycuda\\cuda']
keep = False, nvcc = 'nvcc'
cache_dir = 'C:\\Users\\Administrator\\AppData\\Local\\pycuda\\pycuda\\Cache\\compiler-cache-v1', target = 'cubin'
def compile_plain(source, options, keep, nvcc, cache_dir, target="cubin"):
from os.path import join
assert target in ["cubin", "ptx", "fatbin"]
if cache_dir:
checksum = _new_md5()
if "#include" in source:
checksum.update(preprocess_source(source, options, nvcc).encode("utf-8"))
else:
checksum.update(source.encode("utf-8"))
for option in options:
checksum.update(option.encode("utf-8"))
checksum.update(get_nvcc_version(nvcc).encode("utf-8"))
from pycuda.characterize import platform_bits
checksum.update(str(platform_bits()).encode("utf-8"))
cache_file = checksum.hexdigest()
cache_path = join(cache_dir, cache_file + "." + target)
try:
cache_file = open(cache_path, "rb")
try:
return cache_file.read()
finally:
cache_file.close()
except Exception:
pass
from tempfile import mkdtemp
file_dir = mkdtemp()
file_root = "kernel"
cu_file_name = file_root + ".cu"
cu_file_path = join(file_dir, cu_file_name)
outf = open(cu_file_path, "w")
outf.write(str(source))
outf.close()
if keep:
options = options[:]
options.append("--keep")
print("*** compiler output in %s" % file_dir)
cmdline = [nvcc, "--" + target] + options + [cu_file_name]
result, stdout, stderr = call_capture_output(
cmdline, cwd=file_dir, error_on_nonzero=False
)
try:
result_f = open(join(file_dir, file_root + "." + target), "rb")
except OSError:
no_output = True
else:
no_output = False
if result != 0 or (no_output and (stdout or stderr)):
if result == 0:
from warnings import warn
warn(
"PyCUDA: nvcc exited with status 0, but appears to have "
"encountered an error"
)
from pycuda.driver import CompileError
raise CompileError(
"nvcc compilation of %s failed" % cu_file_path,
cmdline,
stdout=stdout.decode("utf-8", "replace"),
> stderr=stderr.decode("utf-8", "replace"),
)
E pycuda.driver.CompileError: nvcc compilation of C:\Users\ADMINI~1\AppData\Local\Temp\tmph5eyg8qh\kernel.cu failed
E [command: nvcc --cubin -arch sm_35 -m64 -Ic:\programdata\anaconda3\envs\pyme\lib\site-packages\pycuda\cuda kernel.cu]
E [stdout:
E kernel.cu(34): error: expected a ")"
E
E 1 error detected in the compilation of "kernel.cu".
E nvcc warning : The 'compute_35', 'compute_37', 'compute_50', 'sm_35', 'sm_37' and 'sm_50' architectures are deprecated, and may be removed in a future release (Use -Wno-deprecated-gpu-targets to suppress warning).
E kernel.cu
E ]
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:155: CompileError
----------------------------------------------- Captured stdout call -----------------------------------------------
Density = 10.204081632653068 /um^2
================================================= warnings summary =================================================
..\..\..\ProgramData\Anaconda3\envs\pyme\lib\site-packages\win32\lib\pywintypes.py:2
C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\win32\lib\pywintypes.py:2: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import imp, sys, os
..\python-microscopy\PYME\IO\MetaDataHandler.py:72
c:\userfiles\pyme\python-microscopy\PYME\IO\MetaDataHandler.py:72: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
from collections import MutableMapping as DictMixin
..\python-microscopy\PYME\IO\MetaDataHandler.py:653
c:\userfiles\pyme\python-microscopy\PYME\IO\MetaDataHandler.py:653: UserWarning: DictMDHandler is not yet fully supported, and will likely cause failures for anything related to localisation fitting
warnings.warn('DictMDHandler is not yet fully supported, and will likely cause failures for anything related to localisation fitting')
..\python-microscopy\PYME\IO\MetaDataHandler.py:513
..\python-microscopy\PYME\IO\MetaDataHandler.py:513
..\python-microscopy\PYME\IO\MetaDataHandler.py:513
c:\userfiles\pyme\python-microscopy\PYME\IO\MetaDataHandler.py:513: DeprecationWarning: Metadata access should use dictionary based or getEntry() syntax, not attribute based access
warnings.warn('Metadata access should use dictionary based or getEntry() syntax, not attribute based access', DeprecationWarning)
-- Docs: https://docs.pytest.org/en/stable/warnings.html
============================================= short test summary info ==============================================
FAILED warpdrive/test_detection.py::test_repeatability_same_frame - pycuda.driver.CompileError: nvcc compilation o...
FAILED warpdrive/test_detection.py::test_repeatability_multiframe - pycuda.driver.CompileError: nvcc compilation o...
FAILED warpdrive/test_detection.py::test_camera_correction_and_sigma_calc - pycuda.driver.CompileError: nvcc compi...
=============================== 3 failed, 12 passed, 6 warnings in 171.30s (0:02:51) ===============================
Exception ignored in:
Traceback (most recent call last):
File "C:\Userfiles\PYME\pyme-warp-drive\warpdrive\detector.py", line 106, in __del__
cuda.stop_profiler()
pycuda._driver.LogicError: cuProfilerStop failed: invalid device context
Exception ignored in:
Traceback (most recent call last):
File "C:\Userfiles\PYME\pyme-warp-drive\warpdrive\detector.py", line 106, in __del__
cuda.stop_profiler()
pycuda._driver.LogicError: cuProfilerStop failed: invalid device context
Exception ignored in:
Traceback (most recent call last):
File "C:\Userfiles\PYME\pyme-warp-drive\warpdrive\detector.py", line 106, in __del__
pycuda._driver.LogicError: cuProfilerStop failed: invalid device context
```
NVCC version info and conda list
```
(pyme) C:\Userfiles\PYME\pyme-warp-drive>nvcc --version
nvcc: NVIDIA (R) Cuda compiler driver
Copyright (c) 2005-2020 NVIDIA Corporation
Built on Mon_Nov_30_19:15:10_Pacific_Standard_Time_2020
Cuda compilation tools, release 11.2, V11.2.67
Build cuda_11.2.r11.2/compiler.29373293_0
(pyme) C:\Userfiles\PYME\pyme-warp-drive>conda list
# packages in environment at C:\ProgramData\Anaconda3\envs\pyme:
#
# Name Version Build Channel
alabaster 0.7.12 py37_0
appdirs 1.4.4 pypi_0 pypi
atomicwrites 1.4.0 py_0
attrs 21.2.0 pyhd3eb1b0_0
babel 2.9.1 pyhd3eb1b0_0
backcall 0.2.0 pyhd3eb1b0_0
blas 1.0 mkl
blosc 1.19.0 h7bd577a_0
bottleneck 1.3.2 py37h2a96729_1
brotlipy 0.7.0 py37h2bbff1b_1003
bzip2 1.0.8 he774522_0
ca-certificates 2021.7.5 haa95532_1
cairo 1.14.12 hf171d8a_3
certifi 2021.5.30 py37haa95532_0
cffi 1.14.6 py37h2bbff1b_0
chardet 4.0.0 py37haa95532_1003
cheroot 8.5.2 py37haa95532_1
cherrypy 18.6.0 py37haa95532_0
cloudpickle 1.6.0 py_0
colorama 0.4.4 pyhd3eb1b0_0
cryptography 3.4.7 py37h71e12ea_0
cycler 0.10.0 py37_0
cython 0.29.24 py37hd77b12b_0
cytoolz 0.11.0 py37he774522_0
dask-core 2021.8.0 pyhd3eb1b0_0
decorator 5.0.9 pyhd3eb1b0_0
docutils 0.17.1 py37haa95532_1
fftw 3.3.4 0 david_baddeley
freetype 2.10.4 hd328e21_0
fsspec 2021.7.0 pyhd3eb1b0_0
future 0.18.2 py37_1
git 2.32.0 haa95532_1
hdf5 1.10.4 h7ebc959_0
icc_rt 2019.0.0 h0cc432a_1
icu 58.2 ha925a31_3
idna 2.10 pyhd3eb1b0_0
ifaddr 0.1.6 py_0 david_baddeley
imageio 2.9.0 pyhd3eb1b0_0
imagesize 1.2.0 pyhd3eb1b0_0
importlib-metadata 3.10.0 py37haa95532_0
importlib_metadata 3.10.0 hd3eb1b0_0
iniconfig 1.1.1 pyhd3eb1b0_0
intel-openmp 2021.3.0 haa95532_3372
ipython 7.26.0 py37hd4e2768_0
ipython_genutils 0.2.0 pyhd3eb1b0_1
jaraco.classes 3.2.1 pyhd3eb1b0_0
jaraco.collections 3.3.0 pyhd3eb1b0_0
jaraco.functools 3.3.0 pyhd3eb1b0_0
jaraco.text 3.5.1 py37haa95532_2
jedi 0.18.0 py37haa95532_1
jinja2 3.0.1 pyhd3eb1b0_0
joblib 1.0.1 pyhd3eb1b0_0
jpeg 9b hb83a4c4_2
kiwisolver 1.3.1 py37hd77b12b_0
libpng 1.6.37 h2a8f88b_0
libtiff 4.2.0 hd0e1b90_0
locket 0.2.1 py37haa95532_1
lz4-c 1.9.3 h2bbff1b_1
lzo 2.10 he774522_2
mako 1.1.4 pypi_0 pypi
markupsafe 2.0.1 py37h2bbff1b_0
matplotlib 3.1.2 py37h64f37c6_0
matplotlib-inline 0.1.2 pyhd3eb1b0_2
mkl 2020.2 256
mkl-service 2.3.0 py37h196d8e1_0
mkl_fft 1.3.0 py37h46781fe_0
mkl_random 1.1.1 py37h47e9c7a_0
mock 4.0.3 pyhd3eb1b0_0
more-itertools 8.8.0 pyhd3eb1b0_0
mpld3 v0.3 py37_0 david_baddeley
networkx 2.6.2 pyhd3eb1b0_0
numexpr 2.7.3 py37hcbcaa1e_0
numpy 1.19.2 py37hadc3359_0
numpy-base 1.19.2 py37ha3acd2a_0
olefile 0.46 py37_0
openssl 1.1.1k h2bbff1b_0
packaging 21.0 pyhd3eb1b0_0
pandas 1.3.1 py37h6214cd6_0
parso 0.8.2 pyhd3eb1b0_0
partd 1.2.0 pyhd3eb1b0_0
pickleshare 0.7.5 pyhd3eb1b0_1003
pillow 8.3.1 py37h4fa10fc_0
pip 21.2.2 py37haa95532_0
pixman 0.40.0 he774522_0
pluggy 0.13.1 py37haa95532_0
portend 2.7.1 pyhd3eb1b0_0
prompt-toolkit 3.0.17 pyh06a4308_0
psutil 5.8.0 py37h2bbff1b_1
py 1.10.0 pyhd3eb1b0_0
pycairo 1.19.1 py37hb2538c6_0
pycparser 2.20 py_2
pycuda 2021.1 pypi_0 pypi
pyface 7.1.0 py37_1
pyfftw 0.11.1+26.g101c792 pypi_0 pypi
pygments 2.9.0 pyhd3eb1b0_0
pyme-depends 1.17 py37_0 david_baddeley
pyme-warp-drive 0.3 dev_0
pymecompress 0.2.0 py37_0 david_baddeley
pyopengl 3.1.1a1 py37haa95532_0
pyopenssl 20.0.1 pyhd3eb1b0_1
pyparsing 2.4.7 pyhd3eb1b0_0
pyqt 5.9.2 py37h6538335_2
pysocks 1.7.1 py37_1
pytables 3.6.1 py37h1da0976_0
pytest 6.2.4 py37haa95532_2
python 3.7.11 h6244533_0
python-dateutil 2.8.2 pyhd3eb1b0_0
python-microscopy 21.7.7 dev_0
pytools 2021.2.8 pypi_0 pypi
pytz 2021.1 pyhd3eb1b0_0
pywavelets 1.1.1 py37he774522_2
pywin32 228 py37hbaba5e8_1
pyyaml 5.4.1 py37h2bbff1b_1
qt 5.9.7 vc14h73c81de_0
repoze.lru 0.7 py37_0
requests 2.25.1 pyhd3eb1b0_0
routes 2.5.1 py37haa95532_0
scikit-image 0.16.2 py37h47e9c7a_0
scikit-learn 0.24.2 py37hf11a4ad_1
scipy 1.3.0 py37h29ff71c_0
setuptools 52.0.0 py37haa95532_0
simplejson 3.17.3 py37h2bbff1b_2
sip 4.19.8 py37h6538335_0
six 1.16.0 pyhd3eb1b0_0
snappy 1.1.8 h33f27b4_0
snowballstemmer 2.1.0 pyhd3eb1b0_0
sphinx 4.0.2 pyhd3eb1b0_0
sphinxcontrib-applehelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-devhelp 1.0.2 pyhd3eb1b0_0
sphinxcontrib-htmlhelp 2.0.0 pyhd3eb1b0_0
sphinxcontrib-jsmath 1.0.1 pyhd3eb1b0_0
sphinxcontrib-qthelp 1.0.3 pyhd3eb1b0_0
sphinxcontrib-serializinghtml 1.1.5 pyhd3eb1b0_0
sqlite 3.36.0 h2bbff1b_0
tempora 4.1.1 pyhd3eb1b0_0
threadpoolctl 2.2.0 pyhbf3da8f_0
tk 8.6.10 he774522_0
toml 0.10.2 pyhd3eb1b0_0
toolz 0.11.1 pyhd3eb1b0_0
toposort 1.5 py37_3 david_baddeley
tornado 6.1 py37h2bbff1b_0
traitlets 5.0.5 pyhd3eb1b0_0
traits 6.2.0 py37h2bbff1b_0
traitsui 7.1.0 py_0
typing_extensions 3.10.0.0 pyh06a4308_0
ujson 4.0.2 py37hd77b12b_0
urllib3 1.26.6 pyhd3eb1b0_1
vc 14.2 h21ff451_1
vs2015_runtime 14.27.29016 h5e58377_2
wcwidth 0.2.5 py_0
wheel 0.37.0 pyhd3eb1b0_0
win_inet_pton 1.1.0 py37haa95532_0
wincertstore 0.2 py37_0
wxpython 4.0.4 py37ha925a31_0
xz 5.2.5 h62dcd97_0
yaml 0.2.5 he774522_0
zc.lockfile 2.0 py_0
zeroconf 0.24.0 py37_3 david_baddeley
zipp 3.5.0 pyhd3eb1b0_0
zlib 1.2.11 h62dcd97_4
zstd 1.4.9 h19a0ad4_0
```
barentine
commented
3 years ago
Unclear if the compute capability is the issue. Buffer tests compile and pass, filtering however fails to compile. Some deprecation warnings about architecture.
pytest output
``` ================================================= test session starts ================================================= platform win32 -- Python 3.7.11, pytest-6.2.4, py-1.10.0, pluggy-0.13.1 rootdir: C:\Userfiles\PYME\pyme-warp-drive collected 15 items warpdrive\test_buffers.py ............ [ 80%] warpdrive\test_detection.py FFF [100%] ===================================================== FAILURES ===================================================== __________________________________________ test_repeatability_same_frame ___________________________________________ def test_repeatability_same_frame(): from PYME.localization.FitFactories import AstigGaussGPUFitFR from PYME.IO import MetaDataHandler x, _, im = gen_image() fitter = AstigGaussGPUFitFR.FitFactory(np.atleast_3d(im), mdh) > results = fitter.FindAndFit(1, cameraMaps=camera_info_manager) warpdrive\test_detection.py:57: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ..\python-microscopy\PYME\localization\FitFactories\AstigGaussGPUFitFR.py:255: in FindAndFit self.refresh_warpdrive(cameraMaps) ..\python-microscopy\PYME\localization\FitFactories\AstigGaussGPUFitFR.py:171: in refresh_warpdrive _warpdrive = warpdrive.detector(small_filter_size, 2 * small_filter_size, guess_psf_sigma_pix) warpdrive\detector.py:75: in __init__ self.dog_mod = compile_filters() warpdrive\detector_cu.py:26: in compile_filters mod = SourceModule(FILTER_SOURCE) C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:358: in __init__ include_dirs, C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:298: in compile return compile_plain(source, options, keep, nvcc, cache_dir, target) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ source = 'extern "C" {\n/*\nfilter.cu contains various convolution functions for the detector class to call.\n\nAndrew Barentin... uniflargedat[dloc] = (unifsmalldat[dloc]/unifsmallvar[dloc]) - (uniflargedat[dloc]/uniflargevar[dloc]);\n\n}\n\n}\n' options = ['-arch', 'sm_35', '-m64', '-Ic:\\programdata\\anaconda3\\envs\\pyme\\lib\\site-packages\\pycuda\\cuda'] keep = False, nvcc = 'nvcc' cache_dir = 'C:\\Users\\Administrator\\AppData\\Local\\pycuda\\pycuda\\Cache\\compiler-cache-v1', target = 'cubin' def compile_plain(source, options, keep, nvcc, cache_dir, target="cubin"): from os.path import join assert target in ["cubin", "ptx", "fatbin"] if cache_dir: checksum = _new_md5() if "#include" in source: checksum.update(preprocess_source(source, options, nvcc).encode("utf-8")) else: checksum.update(source.encode("utf-8")) for option in options: checksum.update(option.encode("utf-8")) checksum.update(get_nvcc_version(nvcc).encode("utf-8")) from pycuda.characterize import platform_bits checksum.update(str(platform_bits()).encode("utf-8")) cache_file = checksum.hexdigest() cache_path = join(cache_dir, cache_file + "." + target) try: cache_file = open(cache_path, "rb") try: return cache_file.read() finally: cache_file.close() except Exception: pass from tempfile import mkdtemp file_dir = mkdtemp() file_root = "kernel" cu_file_name = file_root + ".cu" cu_file_path = join(file_dir, cu_file_name) outf = open(cu_file_path, "w") outf.write(str(source)) outf.close() if keep: options = options[:] options.append("--keep") print("*** compiler output in %s" % file_dir) cmdline = [nvcc, "--" + target] + options + [cu_file_name] result, stdout, stderr = call_capture_output( cmdline, cwd=file_dir, error_on_nonzero=False ) try: result_f = open(join(file_dir, file_root + "." + target), "rb") except OSError: no_output = True else: no_output = False if result != 0 or (no_output and (stdout or stderr)): if result == 0: from warnings import warn warn( "PyCUDA: nvcc exited with status 0, but appears to have " "encountered an error" ) from pycuda.driver import CompileError raise CompileError( "nvcc compilation of %s failed" % cu_file_path, cmdline, stdout=stdout.decode("utf-8", "replace"), > stderr=stderr.decode("utf-8", "replace"), ) E pycuda.driver.CompileError: nvcc compilation of C:\Users\ADMINI~1\AppData\Local\Temp\tmpxzdy86t3\kernel.cu failed E [command: nvcc --cubin -arch sm_35 -m64 -Ic:\programdata\anaconda3\envs\pyme\lib\site-packages\pycuda\cuda kernel.cu] E [stdout: E kernel.cu(34): error: expected a ")" E E 1 error detected in the compilation of "kernel.cu". E nvcc warning : The 'compute_35', 'compute_37', 'compute_50', 'sm_35', 'sm_37' and 'sm_50' architectures are deprecated, and may be removed in a future release (Use -Wno-deprecated-gpu-targets to suppress warning). E kernel.cu E ] C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:155: CompileError ----------------------------------------------- Captured stdout call ----------------------------------------------- Density = 10.204081632653068 /um^2 __________________________________________ test_repeatability_multiframe ___________________________________________ def test_repeatability_multiframe(): from PYME.localization.FitFactories import AstigGaussGPUFitFR from PYME.IO import MetaDataHandler from PYME.localization.remFitBuf import CameraInfoManager n_frame_batch = 50 res = [] ims = [] for ind in range(n_frame_batch): _, _, im = gen_image() ims.append(im) > _res = AstigGaussGPUFitFR.FitFactory(np.atleast_3d(im), mdh).FindAndFit(1, cameraMaps=camera_info_manager) warpdrive\test_detection.py:86: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ ..\python-microscopy\PYME\localization\FitFactories\AstigGaussGPUFitFR.py:255: in FindAndFit self.refresh_warpdrive(cameraMaps) ..\python-microscopy\PYME\localization\FitFactories\AstigGaussGPUFitFR.py:171: in refresh_warpdrive _warpdrive = warpdrive.detector(small_filter_size, 2 * small_filter_size, guess_psf_sigma_pix) warpdrive\detector.py:75: in __init__ self.dog_mod = compile_filters() warpdrive\detector_cu.py:26: in compile_filters mod = SourceModule(FILTER_SOURCE) C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:358: in __init__ include_dirs, C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:298: in compile return compile_plain(source, options, keep, nvcc, cache_dir, target) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ source = 'extern "C" {\n/*\nfilter.cu contains various convolution functions for the detector class to call.\n\nAndrew Barentin... uniflargedat[dloc] = (unifsmalldat[dloc]/unifsmallvar[dloc]) - (uniflargedat[dloc]/uniflargevar[dloc]);\n\n}\n\n}\n' options = ['-arch', 'sm_35', '-m64', '-Ic:\\programdata\\anaconda3\\envs\\pyme\\lib\\site-packages\\pycuda\\cuda'] keep = False, nvcc = 'nvcc' cache_dir = 'C:\\Users\\Administrator\\AppData\\Local\\pycuda\\pycuda\\Cache\\compiler-cache-v1', target = 'cubin' def compile_plain(source, options, keep, nvcc, cache_dir, target="cubin"): from os.path import join assert target in ["cubin", "ptx", "fatbin"] if cache_dir: checksum = _new_md5() if "#include" in source: checksum.update(preprocess_source(source, options, nvcc).encode("utf-8")) else: checksum.update(source.encode("utf-8")) for option in options: checksum.update(option.encode("utf-8")) checksum.update(get_nvcc_version(nvcc).encode("utf-8")) from pycuda.characterize import platform_bits checksum.update(str(platform_bits()).encode("utf-8")) cache_file = checksum.hexdigest() cache_path = join(cache_dir, cache_file + "." + target) try: cache_file = open(cache_path, "rb") try: return cache_file.read() finally: cache_file.close() except Exception: pass from tempfile import mkdtemp file_dir = mkdtemp() file_root = "kernel" cu_file_name = file_root + ".cu" cu_file_path = join(file_dir, cu_file_name) outf = open(cu_file_path, "w") outf.write(str(source)) outf.close() if keep: options = options[:] options.append("--keep") print("*** compiler output in %s" % file_dir) cmdline = [nvcc, "--" + target] + options + [cu_file_name] result, stdout, stderr = call_capture_output( cmdline, cwd=file_dir, error_on_nonzero=False ) try: result_f = open(join(file_dir, file_root + "." + target), "rb") except OSError: no_output = True else: no_output = False if result != 0 or (no_output and (stdout or stderr)): if result == 0: from warnings import warn warn( "PyCUDA: nvcc exited with status 0, but appears to have " "encountered an error" ) from pycuda.driver import CompileError raise CompileError( "nvcc compilation of %s failed" % cu_file_path, cmdline, stdout=stdout.decode("utf-8", "replace"), > stderr=stderr.decode("utf-8", "replace"), ) E pycuda.driver.CompileError: nvcc compilation of C:\Users\ADMINI~1\AppData\Local\Temp\tmprxzt6emg\kernel.cu failed E [command: nvcc --cubin -arch sm_35 -m64 -Ic:\programdata\anaconda3\envs\pyme\lib\site-packages\pycuda\cuda kernel.cu] E [stdout: E kernel.cu(34): error: expected a ")" E E 1 error detected in the compilation of "kernel.cu". E nvcc warning : The 'compute_35', 'compute_37', 'compute_50', 'sm_35', 'sm_37' and 'sm_50' architectures are deprecated, and may be removed in a future release (Use -Wno-deprecated-gpu-targets to suppress warning). E kernel.cu E ] C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:155: CompileError ----------------------------------------------- Captured stdout call ----------------------------------------------- Density = 10.204081632653068 /um^2 ______________________________________ test_camera_correction_and_sigma_calc _______________________________________ def test_camera_correction_and_sigma_calc(): import warpdrive as wd _, _, im = gen_image() im = im.astype(np.float32) darkmap = 1 * np.ones_like(im) varmap = np.ones_like(im) flatmap = np.ones_like(im) eperadu = np.float32(0.41) noise_factor = np.float32(1.0) em_gain = np.float32(1.0) corrected = (im - darkmap) * flatmap * eperadu sigma = np.sqrt(varmap + noise_factor * noise_factor * em_gain * np.max(np.stack([corrected, np.ones_like(im)]), axis=0) + em_gain * em_gain / eperadu) > _warpdrive = wd.detector() warpdrive\test_detection.py:114: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ warpdrive\detector.py:75: in __init__ self.dog_mod = compile_filters() warpdrive\detector_cu.py:26: in compile_filters mod = SourceModule(FILTER_SOURCE) C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:358: in __init__ include_dirs, C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:298: in compile return compile_plain(source, options, keep, nvcc, cache_dir, target) _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ source = 'extern "C" {\n/*\nfilter.cu contains various convolution functions for the detector class to call.\n\nAndrew Barentin... uniflargedat[dloc] = (unifsmalldat[dloc]/unifsmallvar[dloc]) - (uniflargedat[dloc]/uniflargevar[dloc]);\n\n}\n\n}\n' options = ['-arch', 'sm_35', '-m64', '-Ic:\\programdata\\anaconda3\\envs\\pyme\\lib\\site-packages\\pycuda\\cuda'] keep = False, nvcc = 'nvcc' cache_dir = 'C:\\Users\\Administrator\\AppData\\Local\\pycuda\\pycuda\\Cache\\compiler-cache-v1', target = 'cubin' def compile_plain(source, options, keep, nvcc, cache_dir, target="cubin"): from os.path import join assert target in ["cubin", "ptx", "fatbin"] if cache_dir: checksum = _new_md5() if "#include" in source: checksum.update(preprocess_source(source, options, nvcc).encode("utf-8")) else: checksum.update(source.encode("utf-8")) for option in options: checksum.update(option.encode("utf-8")) checksum.update(get_nvcc_version(nvcc).encode("utf-8")) from pycuda.characterize import platform_bits checksum.update(str(platform_bits()).encode("utf-8")) cache_file = checksum.hexdigest() cache_path = join(cache_dir, cache_file + "." + target) try: cache_file = open(cache_path, "rb") try: return cache_file.read() finally: cache_file.close() except Exception: pass from tempfile import mkdtemp file_dir = mkdtemp() file_root = "kernel" cu_file_name = file_root + ".cu" cu_file_path = join(file_dir, cu_file_name) outf = open(cu_file_path, "w") outf.write(str(source)) outf.close() if keep: options = options[:] options.append("--keep") print("*** compiler output in %s" % file_dir) cmdline = [nvcc, "--" + target] + options + [cu_file_name] result, stdout, stderr = call_capture_output( cmdline, cwd=file_dir, error_on_nonzero=False ) try: result_f = open(join(file_dir, file_root + "." + target), "rb") except OSError: no_output = True else: no_output = False if result != 0 or (no_output and (stdout or stderr)): if result == 0: from warnings import warn warn( "PyCUDA: nvcc exited with status 0, but appears to have " "encountered an error" ) from pycuda.driver import CompileError raise CompileError( "nvcc compilation of %s failed" % cu_file_path, cmdline, stdout=stdout.decode("utf-8", "replace"), > stderr=stderr.decode("utf-8", "replace"), ) E pycuda.driver.CompileError: nvcc compilation of C:\Users\ADMINI~1\AppData\Local\Temp\tmph5eyg8qh\kernel.cu failed E [command: nvcc --cubin -arch sm_35 -m64 -Ic:\programdata\anaconda3\envs\pyme\lib\site-packages\pycuda\cuda kernel.cu] E [stdout: E kernel.cu(34): error: expected a ")" E E 1 error detected in the compilation of "kernel.cu". E nvcc warning : The 'compute_35', 'compute_37', 'compute_50', 'sm_35', 'sm_37' and 'sm_50' architectures are deprecated, and may be removed in a future release (Use -Wno-deprecated-gpu-targets to suppress warning). E kernel.cu E ] C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\pycuda\compiler.py:155: CompileError ----------------------------------------------- Captured stdout call ----------------------------------------------- Density = 10.204081632653068 /um^2 ================================================= warnings summary ================================================= ..\..\..\ProgramData\Anaconda3\envs\pyme\lib\site-packages\win32\lib\pywintypes.py:2 C:\ProgramData\Anaconda3\envs\pyme\lib\site-packages\win32\lib\pywintypes.py:2: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses import imp, sys, os ..\python-microscopy\PYME\IO\MetaDataHandler.py:72 c:\userfiles\pyme\python-microscopy\PYME\IO\MetaDataHandler.py:72: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working from collections import MutableMapping as DictMixin ..\python-microscopy\PYME\IO\MetaDataHandler.py:653 c:\userfiles\pyme\python-microscopy\PYME\IO\MetaDataHandler.py:653: UserWarning: DictMDHandler is not yet fully supported, and will likely cause failures for anything related to localisation fitting warnings.warn('DictMDHandler is not yet fully supported, and will likely cause failures for anything related to localisation fitting') ..\python-microscopy\PYME\IO\MetaDataHandler.py:513 ..\python-microscopy\PYME\IO\MetaDataHandler.py:513 ..\python-microscopy\PYME\IO\MetaDataHandler.py:513 c:\userfiles\pyme\python-microscopy\PYME\IO\MetaDataHandler.py:513: DeprecationWarning: Metadata access should use dictionary based or getEntry() syntax, not attribute based access warnings.warn('Metadata access should use dictionary based or getEntry() syntax, not attribute based access', DeprecationWarning) -- Docs: https://docs.pytest.org/en/stable/warnings.html ============================================= short test summary info ============================================== FAILED warpdrive/test_detection.py::test_repeatability_same_frame - pycuda.driver.CompileError: nvcc compilation o... FAILED warpdrive/test_detection.py::test_repeatability_multiframe - pycuda.driver.CompileError: nvcc compilation o... FAILED warpdrive/test_detection.py::test_camera_correction_and_sigma_calc - pycuda.driver.CompileError: nvcc compi... =============================== 3 failed, 12 passed, 6 warnings in 171.30s (0:02:51) =============================== Exception ignored in:NVCC version info and conda list
``` (pyme) C:\Userfiles\PYME\pyme-warp-drive>nvcc --version nvcc: NVIDIA (R) Cuda compiler driver Copyright (c) 2005-2020 NVIDIA Corporation Built on Mon_Nov_30_19:15:10_Pacific_Standard_Time_2020 Cuda compilation tools, release 11.2, V11.2.67 Build cuda_11.2.r11.2/compiler.29373293_0 (pyme) C:\Userfiles\PYME\pyme-warp-drive>conda list # packages in environment at C:\ProgramData\Anaconda3\envs\pyme: # # Name Version Build Channel alabaster 0.7.12 py37_0 appdirs 1.4.4 pypi_0 pypi atomicwrites 1.4.0 py_0 attrs 21.2.0 pyhd3eb1b0_0 babel 2.9.1 pyhd3eb1b0_0 backcall 0.2.0 pyhd3eb1b0_0 blas 1.0 mkl blosc 1.19.0 h7bd577a_0 bottleneck 1.3.2 py37h2a96729_1 brotlipy 0.7.0 py37h2bbff1b_1003 bzip2 1.0.8 he774522_0 ca-certificates 2021.7.5 haa95532_1 cairo 1.14.12 hf171d8a_3 certifi 2021.5.30 py37haa95532_0 cffi 1.14.6 py37h2bbff1b_0 chardet 4.0.0 py37haa95532_1003 cheroot 8.5.2 py37haa95532_1 cherrypy 18.6.0 py37haa95532_0 cloudpickle 1.6.0 py_0 colorama 0.4.4 pyhd3eb1b0_0 cryptography 3.4.7 py37h71e12ea_0 cycler 0.10.0 py37_0 cython 0.29.24 py37hd77b12b_0 cytoolz 0.11.0 py37he774522_0 dask-core 2021.8.0 pyhd3eb1b0_0 decorator 5.0.9 pyhd3eb1b0_0 docutils 0.17.1 py37haa95532_1 fftw 3.3.4 0 david_baddeley freetype 2.10.4 hd328e21_0 fsspec 2021.7.0 pyhd3eb1b0_0 future 0.18.2 py37_1 git 2.32.0 haa95532_1 hdf5 1.10.4 h7ebc959_0 icc_rt 2019.0.0 h0cc432a_1 icu 58.2 ha925a31_3 idna 2.10 pyhd3eb1b0_0 ifaddr 0.1.6 py_0 david_baddeley imageio 2.9.0 pyhd3eb1b0_0 imagesize 1.2.0 pyhd3eb1b0_0 importlib-metadata 3.10.0 py37haa95532_0 importlib_metadata 3.10.0 hd3eb1b0_0 iniconfig 1.1.1 pyhd3eb1b0_0 intel-openmp 2021.3.0 haa95532_3372 ipython 7.26.0 py37hd4e2768_0 ipython_genutils 0.2.0 pyhd3eb1b0_1 jaraco.classes 3.2.1 pyhd3eb1b0_0 jaraco.collections 3.3.0 pyhd3eb1b0_0 jaraco.functools 3.3.0 pyhd3eb1b0_0 jaraco.text 3.5.1 py37haa95532_2 jedi 0.18.0 py37haa95532_1 jinja2 3.0.1 pyhd3eb1b0_0 joblib 1.0.1 pyhd3eb1b0_0 jpeg 9b hb83a4c4_2 kiwisolver 1.3.1 py37hd77b12b_0 libpng 1.6.37 h2a8f88b_0 libtiff 4.2.0 hd0e1b90_0 locket 0.2.1 py37haa95532_1 lz4-c 1.9.3 h2bbff1b_1 lzo 2.10 he774522_2 mako 1.1.4 pypi_0 pypi markupsafe 2.0.1 py37h2bbff1b_0 matplotlib 3.1.2 py37h64f37c6_0 matplotlib-inline 0.1.2 pyhd3eb1b0_2 mkl 2020.2 256 mkl-service 2.3.0 py37h196d8e1_0 mkl_fft 1.3.0 py37h46781fe_0 mkl_random 1.1.1 py37h47e9c7a_0 mock 4.0.3 pyhd3eb1b0_0 more-itertools 8.8.0 pyhd3eb1b0_0 mpld3 v0.3 py37_0 david_baddeley networkx 2.6.2 pyhd3eb1b0_0 numexpr 2.7.3 py37hcbcaa1e_0 numpy 1.19.2 py37hadc3359_0 numpy-base 1.19.2 py37ha3acd2a_0 olefile 0.46 py37_0 openssl 1.1.1k h2bbff1b_0 packaging 21.0 pyhd3eb1b0_0 pandas 1.3.1 py37h6214cd6_0 parso 0.8.2 pyhd3eb1b0_0 partd 1.2.0 pyhd3eb1b0_0 pickleshare 0.7.5 pyhd3eb1b0_1003 pillow 8.3.1 py37h4fa10fc_0 pip 21.2.2 py37haa95532_0 pixman 0.40.0 he774522_0 pluggy 0.13.1 py37haa95532_0 portend 2.7.1 pyhd3eb1b0_0 prompt-toolkit 3.0.17 pyh06a4308_0 psutil 5.8.0 py37h2bbff1b_1 py 1.10.0 pyhd3eb1b0_0 pycairo 1.19.1 py37hb2538c6_0 pycparser 2.20 py_2 pycuda 2021.1 pypi_0 pypi pyface 7.1.0 py37_1 pyfftw 0.11.1+26.g101c792 pypi_0 pypi pygments 2.9.0 pyhd3eb1b0_0 pyme-depends 1.17 py37_0 david_baddeley pyme-warp-drive 0.3 dev_0