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Python crash every time opening pycharm, seems related to tensorflow #83920

Closed a0377994-e8a1-447b-a8b8-0215bd4fd894 closed 4 years ago

a0377994-e8a1-447b-a8b8-0215bd4fd894 commented 4 years ago
BPO 39739
Nosy @ronaldoussoren, @mdickinson, @ned-deily

Note: these values reflect the state of the issue at the time it was migrated and might not reflect the current state.

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GitHub fields: ```python assignee = None closed_at = created_at = labels = ['OS-mac', '3.7', 'type-crash'] title = 'Python crash every time opening pycharm, seems related to tensorflow' updated_at = user = 'https://bugs.python.org/leo212121' ``` bugs.python.org fields: ```python activity = actor = 'mark.dickinson' assignee = 'none' closed = True closed_date = closer = 'mark.dickinson' components = ['macOS'] creation = creator = 'leo212121' dependencies = [] files = [] hgrepos = [] issue_num = 39739 keywords = [] message_count = 3.0 messages = ['362597', '362600', '362601'] nosy_count = 4.0 nosy_names = ['ronaldoussoren', 'mark.dickinson', 'ned.deily', 'leo212121'] pr_nums = [] priority = 'normal' resolution = 'third party' stage = 'resolved' status = 'closed' superseder = None type = 'crash' url = 'https://bugs.python.org/issue39739' versions = ['Python 3.7'] ```

a0377994-e8a1-447b-a8b8-0215bd4fd894 commented 4 years ago

Hey,

Whenever I try to open project in Pycharm, it will update python interpreter before the python process crashes with a SIGABRT and I get a crash window from OSX. I use homebrew with the latest packages and python 3.7.6.

Any help is appreciated. Here's the log:

Process: Python [3240] Path: /usr/local/Cellar/python/3.7.6_1/Frameworks/Python.framework/Versions/3.7/Resources/Python.app/Contents/MacOS/Python Identifier: Python Version: 3.7.6 (3.7.6) Code Type: X86-64 (Native) Parent Process: Python [2877] Responsible: pycharm [2777] User ID: 501

Date/Time: 2020-02-23 20:43:10.553 -0500 OS Version: Mac OS X 10.15.3 (19D76) Report Version: 12

Time Awake Since Boot: 17000 seconds Time Since Wake: 1000 seconds

System Integrity Protection: enabled

Crashed Thread: 0 Dispatch queue: com.apple.main-thread

Exception Type: EXC_CRASH (SIGABRT) Exception Codes: 0x0000000000000000, 0x0000000000000000 Exception Note: EXC_CORPSE_NOTIFY

Application Specific Information: /usr/local/lib/python3.7/site-packages/tensorflow_core/compiler/tf2xla/ops/_xla_ops.so crashed on child side of fork pre-exec

Thread 0 Crashed:: Dispatch queue: com.apple.main-thread 0 libsystemkernel.dylib 0x00007fff656707fa \_pthread_kill + 10 1 libsystem_pthread.dylib 0x00007fff6572dbc1 pthread_kill + 432 2 libsystem_c.dylib 0x00007fff655873a2 raise + 26 3 libsystemplatform.dylib 0x00007fff6572242d _sigtramp + 29 4 ??? 0x00007fff8f33a988 \_c_locale + 1480 5 libsystem_c.dylib 0x00007fff655f7a1c abort + 120 6 libtensorflow_framework.2.dylib 0x0000000122394bec tensorflow::internal::LogMessageFatal::~LogMessageFatal() + 44 7 libtensorflow_framework.2.dylib 0x0000000122394c20 tensorflow::internal::LogMessageFatal::~LogMessageFatal() + 16 8 libtensorflow_framework.2.dylib 0x0000000121c0452a tensorflow::OpRegistry::Register(std::1::function\<tensorflow::Status (tensorflow::OpRegistrationData*)> const&) + 186 9 libtensorflow_framework.2.dylib 0x0000000121c06280 tensorflow::register_op::OpDefBuilderReceiver::OpDefBuilderReceiver(tensorflow::register_op::OpDefBuilderWrapper\<true> const&) + 128 10 _xla_ops.so 0x00000001304d6515 _GLOBALsub_I_xla_ops.cc + 757 11 dyld 0x000000010640e15d ImageLoaderMachO::doModInitFunctions(ImageLoader::LinkContext const&) + 539 12 dyld 0x000000010640e582 ImageLoaderMachO::doInitialization(ImageLoader::LinkContext const&) + 40 13 dyld 0x0000000106408dc7 ImageLoader::recursiveInitialization(ImageLoader::LinkContext const&, unsigned int, char const, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 493 14 dyld 0x0000000106406e58 ImageLoader::processInitializers(ImageLoader::LinkContext const&, unsigned int, ImageLoader::InitializerTimingList&, ImageLoader::UninitedUpwards&) + 188 15 dyld 0x0000000106406ef8 ImageLoader::runInitializers(ImageLoader::LinkContext const&, ImageLoader::InitializerTimingList&) + 82 16 dyld 0x00000001063f8f87 dyld::runInitializers(ImageLoader) + 82 17 dyld 0x0000000106402ad7 dlopen_internal + 609 18 libdyld.dylib 0x00007fff65514a7f dlopen + 171 19 org.python.python 0x000000010399e759 _PyImport_FindSharedFuncptr + 301 20 org.python.python 0x000000010397d5c2 _PyImport_LoadDynamicModuleWithSpec + 495 21 org.python.python 0x000000010397d138 _imp_create_dynamic + 309 22 org.python.python 0x00000001038d2472 _PyMethodDef_RawFastCallDict + 549 23 org.python.python 0x00000001038d1a83 _PyCFunction_FastCallDict + 41 24 org.python.python 0x000000010396065a _PyEval_EvalFrameDefault + 7738 25 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 26 org.python.python 0x00000001038d1d88 _PyFunction_FastCallKeywords + 212 27 org.python.python 0x0000000103967321 call_function + 737 28 org.python.python 0x000000010396028f _PyEval_EvalFrameDefault + 6767 29 org.python.python 0x00000001038d2194 function_code_fastcall + 106 30 org.python.python 0x0000000103967321 call_function + 737 31 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 32 org.python.python 0x00000001038d2194 function_code_fastcall + 106 33 org.python.python 0x0000000103967321 call_function + 737 34 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 35 org.python.python 0x00000001038d2194 function_code_fastcall + 106 36 org.python.python 0x0000000103967321 call_function + 737 37 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 38 org.python.python 0x00000001038d2194 function_code_fastcall + 106 39 org.python.python 0x0000000103967321 call_function + 737 40 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 41 org.python.python 0x00000001038d2194 function_code_fastcall + 106 42 org.python.python 0x00000001038d3542 object_vacall + 267 43 org.python.python 0x00000001038d3641 _PyObject_CallMethodIdObjArgs + 168 44 org.python.python 0x000000010397c373 PyImport_ImportModuleLevelObject + 1490 45 org.python.python 0x000000010395b7c2 builtin_import + 122 46 org.python.python 0x00000001038d2865 _PyMethodDef_RawFastCallKeywords + 537 47 org.python.python 0x00000001038d1dc0 _PyCFunction_FastCallKeywords + 41 48 org.python.python 0x00000001039672b4 call_function + 628 49 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 50 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 51 org.python.python 0x00000001038d1a00 _PyFunction_FastCallDict + 444 52 org.python.python 0x0000000103960573 _PyEval_EvalFrameDefault + 7507 53 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 54 org.python.python 0x00000001038d1a00 _PyFunction_FastCallDict + 444 55 org.python.python 0x0000000103960573 _PyEval_EvalFrameDefault + 7507 56 org.python.python 0x00000001038d2194 function_code_fastcall + 106 57 org.python.python 0x0000000103967321 call_function + 737 58 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 59 org.python.python 0x00000001038d2194 function_code_fastcall + 106 60 org.python.python 0x0000000103967321 call_function + 737 61 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 62 org.python.python 0x00000001038d2194 function_code_fastcall + 106 63 org.python.python 0x0000000103967321 call_function + 737 64 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 65 org.python.python 0x00000001038d2194 function_code_fastcall + 106 66 org.python.python 0x00000001038d2b07 _PyObject_Call_Prepend + 131 67 org.python.python 0x000000010390fe96 slot_tp_init + 80 68 org.python.python 0x000000010390cbc2 type_call + 172 69 org.python.python 0x00000001038d1c36 _PyObject_FastCallKeywords + 358 70 org.python.python 0x000000010396731a call_function + 730 71 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 72 org.python.python 0x00000001038d2194 function_code_fastcall + 106 73 org.python.python 0x0000000103967321 call_function + 737 74 org.python.python 0x000000010396028f _PyEval_EvalFrameDefault + 6767 75 org.python.python 0x00000001038d2194 function_code_fastcall + 106 76 org.python.python 0x0000000103967321 call_function + 737 77 org.python.python 0x000000010396028f _PyEval_EvalFrameDefault + 6767 78 org.python.python 0x00000001038d2194 function_code_fastcall + 106 79 org.python.python 0x0000000103967321 call_function + 737 80 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 81 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 82 org.python.python 0x00000001038d1d88 _PyFunction_FastCallKeywords + 212 83 org.python.python 0x0000000103967321 call_function + 737 84 org.python.python 0x00000001039603d2 _PyEval_EvalFrameDefault + 7090 85 org.python.python 0x00000001038d2194 function_code_fastcall + 106 86 org.python.python 0x0000000103967321 call_function + 737 87 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 88 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 89 org.python.python 0x00000001038d1d88 _PyFunction_FastCallKeywords + 212 90 org.python.python 0x0000000103967321 call_function + 737 91 org.python.python 0x0000000103960276 _PyEval_EvalFrameDefault + 6742 92 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 93 org.python.python 0x00000001038d1d88 _PyFunction_FastCallKeywords + 212 94 org.python.python 0x0000000103967321 call_function + 737 95 org.python.python 0x00000001039603d2 _PyEval_EvalFrameDefault + 7090 96 org.python.python 0x00000001038d2194 function_code_fastcall + 106 97 org.python.python 0x0000000103967321 call_function + 737 98 org.python.python 0x000000010396032a _PyEval_EvalFrameDefault + 6922 99 org.python.python 0x0000000103967b15 _PyEval_EvalCodeWithName + 1698 100 org.python.python 0x000000010395e77d PyEval_EvalCode + 51 101 org.python.python 0x000000010398cbc4 run_mod + 54 102 org.python.python 0x000000010398bbf7 PyRun_FileExFlags + 160 103 org.python.python 0x000000010398b2ae PyRun_SimpleFileExFlags + 270 104 org.python.python 0x00000001039a3abe pymain_main + 5445 105 org.python.python 0x00000001039a412c _Py_UnixMain + 56 106 libdyld.dylib 0x00007fff655297fd start + 1

Thread 1: 0 libsystemkernel.dylib 0x00007fff6566cce6 \_psynch_cvwait + 10 1 libsystem_pthread.dylib 0x00007fff6572e185 _pthread_cond_wait + 701 2 libopenblasp-r0.3.7.dylib 0x000000012a3c4c3b blas_thread_server + 619 3 libsystem_pthread.dylib 0x00007fff6572de65 _pthread_start + 148 4 libsystem_pthread.dylib 0x00007fff6572983b thread_start + 15

Thread 0 crashed with X86 Thread State (64-bit): rax: 0x0000000000000000 rbx: 0x00000001064bcdc0 rcx: 0x00007ffeec346ca8 rdx: 0x0000000000000000 rdi: 0x0000000000000303 rsi: 0x0000000000000006 rbp: 0x00007ffeec346cd0 rsp: 0x00007ffeec346ca8 r8: 0x0000000000000003 r9: 0xcccccccccccccccd r10: 0x00000001064bcdc0 r11: 0x0000000000000246 r12: 0x0000000000000303 r13: 0x0000000000000000 r14: 0x0000000000000006 r15: 0x0000000000000016 rip: 0x00007fff656707fa rfl: 0x0000000000000246 cr2: 0x000000012166e7c0

Logical CPU: 0 Error Code: 0x02000148 Trap Number: 133

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External Modification Summary: Calls made by other processes targeting this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by this process: task_for_pid: 0 thread_create: 0 thread_set_state: 0 Calls made by all processes on this machine: task_for_pid: 58249 thread_create: 0 thread_set_state: 0

VM Region Summary: ReadOnly portion of Libraries: Total=981.7M resident=0K(0%) swapped_out_or_unallocated=981.7M(100%) Writable regions: Total=216.7M written=0K(0%) resident=0K(0%) swapped_out=0K(0%) unallocated=216.7M(100%)

                            VIRTUAL   REGION

REGION TYPE SIZE COUNT (non-coalesced) \=========== ======= ======= Kernel Alloc Once 8K 1 MALLOC 62.1M 65 MALLOC guard page 16K 4 MALLOC_LARGE (reserved) 256K 1 reserved VM address space (unallocated) STACK GUARD 8K 2 Stack 16.5M 2 VM_ALLOCATE 72.0M 289 VMALLOCATE (reserved) 64.0M 2 reserved VM address space (unallocated) __DATA 17.3M 381 \_DATACONST 380K 40 __LINKEDIT 558.9M 185 \_OBJCRO 32.0M 1 \_OBJCRW 1780K 2 __TEXT 422.8M 302 \_UNICODE 564K 1 shared memory 12K 3 \=========== ======= ======= TOTAL 1.2G 1281 TOTAL, minus reserved VM space 1.2G 1281

mdickinson commented 4 years ago

Hmm. I don't see anything here that would indicate that this is a core Python problem. This looks like something you'd need to take up with the tensorflow folks. (Investigations could conceivably turn up a CPython bug as the underlying cause, in which case a more detailed issue could be opened here, but as it stands there's not really much we can do with this.)

a0377994-e8a1-447b-a8b8-0215bd4fd894 commented 4 years ago

Okay, I will discuss this in tensorflow forum. Thanks for providing the information.