pyushkevich / ashs

Automatic Segmentation of Hippocampal Subfields
http://www.nitrc.org/projects/ashs
GNU General Public License v3.0
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List of dependencies for ASHS #8

Open npavlovikj opened 1 year ago

npavlovikj commented 1 year ago

Hi,

Is there a list of dependencies we need in order to use ASHS?

I followed the instructions here, https://sites.google.com/view/ashs-dox/local-ashs/installation, to set ASHS on a Linux machine. However, when I started a test run, I kept getting messages about missing commands. Installing "imagemagick" and "convert3d" helped with some missing commands, such as "_c3d_affinetool" and "convert". However, I am still getting errors about "bc" and "subfield_leveler", so I would appreciate if you can tell me where these commands come from and what are the exact dependencies I need in order to successfully run ASHS.

Thank you, Natasha