Open alcir opened 4 years ago
Which ITK version are you compiling against?
On Wed, Nov 13, 2019 at 5:09 PM Alessio notifications@github.com wrote:
Trying to compile on Fedora 31, I get
...
$ make
Scanning dependencies of target markdown_to_hex
[ 1%] Building C object CMakeFiles/markdown_to_hex.dir/utilities/hexdump.c.o
[ 2%] Linking C executable markdown_to_hex
[ 2%] Built target markdown_to_hex
Scanning dependencies of target markdown_docs
[ 3%] Generating markdown_docs.h
[ 3%] Built target markdown_docs
Scanning dependencies of target cnd_driver
[ 4%] Building CXX object CMakeFiles/cnd_driver.dir/ConvertImageND.cxx.o
In file included from /usr/include/InsightToolkit/itkNumericTraits.h:51,
from /usr/include/InsightToolkit/itkConceptChecking.h:32, from /usr/include/InsightToolkit/itkAtomicIntDetail.h:39, from /usr/include/InsightToolkit/itkAtomicInt.h:38, from /usr/include/InsightToolkit/itkTimeStamp.h:33, from /usr/include/InsightToolkit/itkLightObject.h:23, from /usr/include/InsightToolkit/itkObject.h:31, from /usr/include/InsightToolkit/itkRegion.h:31, from /usr/include/InsightToolkit/itkImageRegion.h:31, from /usr/include/InsightToolkit/itkImage.h:21, from /home/user/Downloads/gggg/c3d-git/itkextras/itkOrientedRASImage.h:4, from /home/user/Downloads/gggg/c3d-git/ConvertImageND.h:29, from /home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:26:
/usr/include/vxl/vcl/vcl_limits.h:11:5: warning: #warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py" [-Wcpp]
11 | # warning "This header will be removed in future versions of VXL. Use equivalent C++11 header instead. see: vxl/scripts/UseStandardHeaders.py"
| ^~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx: In member function ‘int ImageConverter::ProcessCommand(int, char**)’:
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:464:14: error: ‘vcl_acos’ was not declared in this scope
464 | adapter(&vcl_acos);
| ^~~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:517:14: error: ‘vcl_asin’ was not declared in this scope
517 | adapter(&vcl_asin);
| ^~~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:564:14: error: ‘vcl_ceil’ was not declared in this scope
564 | adapter(&vcl_ceil);
| ^~~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:653:14: error: ‘vcl_cos’ was not declared in this scope
653 | adapter(&vcl_cos);
| ^~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:744:14: error: ‘vcl_exp’ was not declared in this scope; did you mean ‘ldexp’?
744 | adapter(&vcl_exp);
| ^~~~~~~ | ldexp
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:800:14: error: ‘vcl_floor’ was not declared in this scope
800 | adapter(&vcl_floor);
| ^~~~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:1029:14: error: ‘vcl_log’ was not declared in this scope
1029 | adapter(&vcl_log);
| ^~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:1036:14: error: ‘vcl_log10’ was not declared in this scope
1036 | adapter(&vcl_log10);
| ^~~~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:1313:11: error: ‘vcl_exp’ was not declared in this scope; did you mean ‘ldexp’?
1313 | exp1(&vcl_exp);
| ^~~~~~~ | ldexp
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:1836:14: error: ‘vcl_sin’ was not declared in this scope
1836 | adapter(&vcl_sin);
| ^~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:1920:14: error: ‘vcl_sqrt’ was not declared in this scope
1920 | adapter(&vcl_sqrt);
| ^~~~~~~~
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx: In instantiation of ‘TPixel ImageConverter::ReadIntensityValue(const char*) [with TPixel = double; unsigned int VDim = 2]’:
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:3094:16: required from here
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:2469:28: error: ‘vnl_math_isnan’ was not declared in this scope; did you mean ‘vnl_mathh’?
2469 | if (!vnl_math_isnan(*q))
| ~~~~~~~~~~~~~~^~~~ | vnl_math_h_
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx: In instantiation of ‘TPixel ImageConverter::ReadIntensityValue(const char*) [with TPixel = double; unsigned int VDim = 3]’:
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:3095:16: required from here
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:2469:28: error: ‘vnl_math_isnan’ was not declared in this scope; did you mean ‘vnl_mathh’?
2469 | if (!vnl_math_isnan(*q))
| ~~~~~~~~~~~~~~^~~~ | vnl_math_h_
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx: In instantiation of ‘TPixel ImageConverter::ReadIntensityValue(const char*) [with TPixel = double; unsigned int VDim = 4]’:
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:3096:16: required from here
/home/user/Downloads/gggg/c3d-git/ConvertImageND.cxx:2469:28: error: ‘vnl_math_isnan’ was not declared in this scope; did you mean ‘vnl_mathh’?
2469 | if (!vnl_math_isnan(*q))
| ~~~~~~~~~~~~~~^~~~ | vnl_math_h_
make[2]: *** [CMakeFiles/cnd_driver.dir/build.make:63: CMakeFiles/cnd_driver.dir/ConvertImageND.cxx.o] Error 1
make[1]: *** [CMakeFiles/Makefile2:329: CMakeFiles/cnd_driver.dir/all] Error 2
— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/pyushkevich/c3d/issues/1?email_source=notifications&email_token=AAJPEWZHMTDFLLUHJKMLZW3QTR3IJA5CNFSM4JNCKTZKYY3PNVWWK3TUL52HS4DFUVEXG43VMWVGG33NNVSW45C7NFSM4HZEXXQA, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJPEW6HEWLCVLPGWUS4EKLQTR3IJANCNFSM4JNCKTZA .
-- Paul A. Yushkevich, Ph.D. Associate Professor Penn Image Computing and Science Laboratory Department of Radiology University of Pennsylvania
4.13.1
Thanks.
A couple things:
Hope this helps!
On Thu, Nov 14, 2019 at 11:19 AM Alessio notifications@github.com wrote:
4.13.1
Thanks.
— You are receiving this because you commented. Reply to this email directly, view it on GitHub https://github.com/pyushkevich/c3d/issues/1?email_source=notifications&email_token=AAJPEW6RNJSEKDW6AB573GTQTV3C3A5CNFSM4JNCKTZKYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEECMYPA#issuecomment-553962556, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAJPEW6AFD7UAF3QWERNHFDQTV3C3ANCNFSM4JNCKTZA .
-- Paul A. Yushkevich, Ph.D. Associate Professor Penn Image Computing and Science Laboratory Department of Radiology University of Pennsylvania
Thank you very much for the answers.
Unfortunately I'm not a developer, so my skills and knowledge are very limited. You can see here https://src.fedoraproject.org/rpms/InsightToolkit/blob/master/f/InsightToolkit.spec how ITK was compiled on Fedora. Maybe there is something preventing compilation of C3D to work?
Trying to compile on Fedora 31, I get