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pyushkevich / cmrep

Continuous Medial Representation
GNU General Public License v3.0
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Which versions of dependent libraries dose this code need? #2

Open debinz opened 4 years ago

debinz commented 4 years ago

Hi!

I have installed the newest version of the dependent libraries (ITK, VTK, lapack, G2C and Pardiso), but it seems to not match your code. Can you tell me the matched versions of these dependent libraries? Thank you for your kind assistance!

Zeng

Pulkit-Khandelwal commented 4 years ago

Try using VTK 6.3 and ITK 4.12.2

debinz commented 4 years ago

Hi！ I have successfully built your codes by using VTK 6.3 and ITK 4.12.2 with no errors, but when I used ./cmrep_vskel ./example/s01_hippolabels_hres_L_MNI_pp_surf_SPHARM.vtk ./example/medial_mesh.vtk to generate medial surface (skeleton), errors occurred: image I don't know what happened, can you tell me how to deal with it? Are there any detailed manuals? Thank you very much!

Zeng

pyushkevich commented 4 years ago

Hello,

Please read the doc for the command cmrep_vskel. You need to provide the path to the qvoronoi binary from qhull.

Sorry for so many complexities/dependencies, this is research code, unpolished.

Paul

On Tue, Nov 26, 2019 at 7:01 AM debinz notifications@github.com wrote:

Hi！ I have successfully built your codes by using VTK 6.3 and ITK 4.12.2 with no errors, but when I used ./cmrep_vskel ./example/s01_hippolabels_hres_L_MNI_pp_surf_SPHARM.vtk ./example/medial_mesh.vtk to generate medial surface (skeleton), errors occurred: [image: image] https://user-images.githubusercontent.com/24296206/69629715-5d4a4800-1087-11ea-827e-a86a46a1aedd.png I don't know what happened, can you tell me how to deal with it? Are there any detailed manuals?

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debinz commented 4 years ago

HI!

Thank you very much! I have successfully generated the medial surface. When I pruned the mesh to clean the branches, I found the medial surface became too small, smaller than the boundary mesh. Can this code extend the edge of the medial surface to the boundary along the curvature of it?

Zeng