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pyushkevich / greedy

Very fast greedy diffeomorphic registration code
GNU General Public License v3.0
59 stars 16 forks source link

Errors when trying to install greedy #31

Closed Anuththara-Rupasinghe closed 2 years ago

Anuththara-Rupasinghe commented 2 years ago

Hi Paul,

I have been trying to install greedy in Linux, following the instructions in https://greedy.readthedocs.io/en/latest/install.html. I tried the installation with two different versions of ITK, -5.2.1 and -4.13.3. When I tried with version 5.2.1, I got the error: 'fatal error: itkVectorResampleImageFilter.h: No such file or directory', when trying to make greedy. I thought this could be due to a version mismatch, and thus tried with an earlier version of ITK 4.13.3. Then, I get a different error in the make step: 'error: 'isnan' was not declared in this scope'. I have been trying to pin-point the source of this error for a couple of weeks, but was unable to do so. It would be great if you can let me know what you think about this, if I am missing something and if there's any way to fix this. Please let me know if you need any further details. Thanks a lot!

Best regards, Anuththara

pyushkevich commented 2 years ago

Hi Anuthtnara,

Could you try building the ith5vtk9 branch using the latest ITK and VTK versions? This is the latest code.

If you want a binary you can download itksnap, one is bundled with it

Best, Paul

On Thu, Feb 10, 2022 at 3:10 PM Anuththara Rupasinghe < @.***> wrote:

Hi Paul,

I have been trying to install greedy in Linux, following the instructions in https://greedy.readthedocs.io/en/latest/install.html. I tried the installation with two different versions of ITK, -5.2.1 and -4.13.3. When I tried with version 5.2.1, I got the error: 'fatal error: itkVectorResampleImageFilter.h: No such file or directory', when trying to make greedy. I thought this could be due to a version mismatch, and thus tried with an earlier version of ITK 4.13.3. Then, I get a different error in the make step: 'error: 'isnan' was not declared in this scope'. I have been trying to pin-point the source of this error for a couple of weeks, but was unable to do so. It would be great if you can let me know what you think about this, if I am missing something and if there's any way to fix this. Please let me know if you need any further details. Thanks a lot!

Best regards, Anuththara

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Paul Yushkevich

Anuththara-Rupasinghe commented 2 years ago

Hi Paul,

Thank you so much for the prompt response, it was very helpful. I was able to build and install Greedy using the latest version that you pointed out.

Best regards, Anuththara