Writing segmentation/label file using third party program

[AlistairMcCutcheon]

I have a model that performs segmentation. I'd like to present the output of this model to the user using itk-snap. My approach will be to write a workplace folder, with it pointing to the main image as well as the segmentation file. The workplace file is in xml and seems straightforward to modify. The segmentation file is not human readable. How would you suggest I go about creating a segmentation file using a third party program?

[pyushkevich]

Hi Alistair,

This the option that is available if you want your model to be runnable from ITK-SNAP: https://alfabis-server.readthedocs.io/en/latest/

If you just want to create ITK-SNAP workspaces, use itksnap-wt (it is in the ITK-SNAP folder and has command-line documentation)

Thanks, Paul

On Sat, Dec 3, 2022 at 9:58 PM AlistairMcCutcheon @.***> wrote:

I have a model that performs segmentation. I'd like to present the output of this model to the user using itk-snap. My approach will be to write a workplace folder, with it pointing to the main image as well as the segmentation file. The workplace file is in xml and seems straightforward to modify. The segmentation file is not human readable. How would you suggest I go about creating a segmentation file using a third party program?

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