This PR adds three new tutorials demonstrating various projection center (PC) calibration functionality:
Extrapolate PCs from a mean to obtain a map of PCs
Fit PCs from selected PCs to obtain a map of PCs
Reproduce Ni example from Pang et al. (2020) (https://doi.org/10.1016/j.ultramic.2019.112876) to show sloppy orientation/PC optimization landscape. Our results using the Nelder-Mead algorithm reproduces theirs using the SNOBFIT global optimization algorithm.
Other notebooks are updated to use the new functionality.
Docs and tests are attempted to be excluded from the source distribution in this PR. This was tested using manifix. If this is actually the case is still uncertain, so at least one release candidate, 0.8.0rc1, will be made to ensure that they are indeed excluded.
Description of the change
This PR adds three new tutorials demonstrating various projection center (PC) calibration functionality:
Other notebooks are updated to use the new functionality.
Docs and tests are attempted to be excluded from the source distribution in this PR. This was tested using
manifix
. If this is actually the case is still uncertain, so at least one release candidate, 0.8.0rc1, will be made to ensure that they are indeed excluded.Progress of the PR
Minimal example of the bug fix or new feature
See documentation built from this PR.
For reviewers
__init__.py
.CHANGELOG.rst
.release.py
,.zenodo.json
and.all-contributorsrc
with the table regenerated.